View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_56 (Length: 409)
Name: NF9264A_low_56
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_56 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 21642420 - 21642805
Alignment:
| Q |
7 |
actctttactttaaattaaaccccggcccccatttatctcacgcccgtcatctcttcgactcacttcacgtcaaagatgttatctcatggacttcactta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21642420 |
actctttactttaaattaaaccccggcccccatttatctcacgcccgtcatctcttcgactcacttcacgtcaaagatgtcatctcatggacttcactta |
21642519 |
T |
|
| Q |
107 |
tctccggttacactcgctccggccagccacatcagtcgatatctttattctacgaaatgttggcatttcctattcaacccaatgcttttactctatcttc |
206 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21642520 |
tctccggttacactcgctccgacctgccacatcaatcgatatctttattctacgaaatgttggcatttcctgttcaacccaatgcttttactctatcttc |
21642619 |
T |
|
| Q |
207 |
cgttattaaagcttgttctacgttgaatgacgtaaaccttgggagatgttttcattctatggttttaacacgtgggtttgattggaatactgttgtttcg |
306 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21642620 |
tgttatcaaagcttgttctgcgttaaatgacgtaaaccttgggagatgctttcattctatggttttaacacgtgggtttgattggaatactgttgtttcg |
21642719 |
T |
|
| Q |
307 |
tgttcgttgattgatatgtatggttggaatcgcgcggttgatgatgcacggagggtgtttgatgaaatgtttgtgaaagatgatgt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21642720 |
tgttcgttgattgatatgtatggttggaatcgcgctgttgatgatgcacggagggtgtttgatgaattgtttgtgaaagatgatgt |
21642805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University