View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_566 (Length: 219)
Name: NF9264A_low_566
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_566 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 24639499 - 24639287
Alignment:
| Q |
1 |
aacaaagactaaactttttcccctcagcatcttcgacaggtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaaagataca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639499 |
aacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaaagataca |
24639400 |
T |
|
| Q |
101 |
gcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639399 |
gcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacatt |
24639300 |
T |
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| Q |
201 |
gtttcctacatat |
213 |
Q |
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||||||||||||| |
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| T |
24639299 |
gtttcctacatat |
24639287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 52491267 - 52491479
Alignment:
| Q |
1 |
aacaaagactaaactttttcccctcagcatcttcgacaggtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaaagataca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491267 |
aacaaagactaaacgttttcccctcagcatcttcaacatgtatttaccatttaacctgcattacatgctcatgtcactaaaacatcacctaaaagataca |
52491366 |
T |
|
| Q |
101 |
gcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491367 |
gcaacacaaacaaaatttacggcttagtcgtctcatcctagaatcagctatgctagccatattttcatgctttgttttagccccatatcaattctacatt |
52491466 |
T |
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| Q |
201 |
gtttcctacatat |
213 |
Q |
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||||||||||||| |
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| T |
52491467 |
gtttcctacatat |
52491479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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