View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_567 (Length: 219)
Name: NF9264A_low_567
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_567 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: scaffold1030 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 2723 - 2556
Alignment:
| Q |
34 |
acgaagagttttgtatcaatataaatannnnnnn--atcaacaaacaacaacaatcaatagttgaaaacaaagttaaaatttacattacataagatcgaa |
131 |
Q |
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| T |
2723 |
acgaagagttttgtatcaatataaatatttttttttatcaacaaacaacaacagtcaatagttgaaaacaaagttaaaatttacattacataagatcgaa |
2624 |
T |
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| Q |
132 |
aaacttaagagggaagaaacaaccaacaaaaagttctataagtaatggaaaatgttaaaatatccata |
199 |
Q |
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| T |
2623 |
aaacttaagagggaagaaacaaccaacaaaaagttctataagtaatggaaaatcttaaaatatccata |
2556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 14278804 - 14278959
Alignment:
| Q |
44 |
ttgtatcaatataaatannnnnnnatcaacaaacaacaacaatcaatagttgaaaacaaagttaaaatttacattacataagatcgaaaaacttaagagg |
143 |
Q |
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| T |
14278804 |
ttgtatcaatataaataattttttattaacaaacaacaatagttaatatttgaaaagaaagtcaaaatttacattacataagattgaaaaacttacgagg |
14278903 |
T |
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| Q |
144 |
gaagaaacaaccaacaaaaagttctataagtaatggaaaatgttaaaatatccata |
199 |
Q |
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| T |
14278904 |
gaagaaacaaccagcaaaaaggtctataagtaatggaaaatgttaaaatattcata |
14278959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 14284262 - 14284406
Alignment:
| Q |
29 |
agacaacgaagagttttgtatcaatataaatannnnnnnatcaacaaacaacaacaatcaatagttgaaaacaaagttaaaatttacattacataagatc |
128 |
Q |
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| T |
14284262 |
agacaacaaagagttttgtatcaatataaatactttcaaat-aataaacaacaacagttaatagtttaaga--aagtcaaattttacattacataagatt |
14284358 |
T |
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| Q |
129 |
gaaaaacttaagagggaagaaacaaccaacaaaaagttctataagtaat |
177 |
Q |
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| T |
14284359 |
gaaaa-cttgtaagggaagaagcaaccaacaaaaagttctataagtaat |
14284406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 35131746 - 35131905
Alignment:
| Q |
31 |
acaacgaagagttttgtatcaatataaatannnnnnnatcaacaaacaacaacaatcaatagttgaaaacaaagttaaaatttacattacataagatcga |
130 |
Q |
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| T |
35131746 |
acaacaaagtgttttgtatcaatataaataattttt-atcaataaagaacaaaaatcaatagtttgaaataaaatcaaaatttacattacataatatccc |
35131844 |
T |
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| Q |
131 |
aaaacttaagagggaagaaacaaccaacaaaaagttctataagtaatggaaaatgttaaaa |
191 |
Q |
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| T |
35131845 |
aaaacttacatgggaaaaagaaaccagcaaaaagttctctaagtaatggagaatgttaaaa |
35131905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 35139054 - 35139213
Alignment:
| Q |
31 |
acaacgaagagttttgtatcaatataaatannnnnnnatcaacaaacaacaacaatcaatagttgaaaacaaagttaaaatttacattacataagatcga |
130 |
Q |
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| T |
35139054 |
acaacaaagtgttttgtatcaatataaatattttgt-atcaataaagaacagcaatcaatagtttgaaataaaagcaaaatttacattacataagatccc |
35139152 |
T |
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| Q |
131 |
aaaacttaagagggaagaaacaaccaacaaaaagttctataagtaatggaaaatgttaaaa |
191 |
Q |
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| T |
35139153 |
aaaacttatatgggaaaaataaaccagcaaaaagttctctaagtaatggagaatgttaaaa |
35139213 |
T |
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