View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_568 (Length: 219)
Name: NF9264A_low_568
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_568 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 42350445 - 42350232
Alignment:
| Q |
6 |
acaaattgctaattttaccagtaacatgttgcattacatcaaaataagaaacatgtcatgttgagcttggatcagaatggatcttttatgttgcggttcg |
105 |
Q |
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| T |
42350445 |
acaaattgctaattttaccattaacatgttgcattacatcaaaataagaaacatgtcatgttgagattgggtcggaatggatcttttatgttgcggttct |
42350346 |
T |
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| Q |
106 |
gtttggttgttaaaataaaaatcacaaatgaaaccgcacaatcgcgttaaaagattgcacaaattcatctgaatcagacacgattttttatgatttcgat |
205 |
Q |
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| T |
42350345 |
ttttggttgttaaaataaaaatcacaaatgaaaccgcacaatcgagttaaaaaattgcatgaattcatctgaaccaaacacaattttttatggtttcgat |
42350246 |
T |
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| Q |
206 |
ttaagttggttcgg |
219 |
Q |
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|||||||||||||| |
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| T |
42350245 |
ttaagttggttcgg |
42350232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 18153464 - 18153413
Alignment:
| Q |
8 |
aaattgctaattttaccagtaacatgttgcattacatcaaaataagaaacat |
59 |
Q |
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| T |
18153464 |
aaattgctaattttaccattagcatgttgcattacatcaaaataagaaacat |
18153413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 1537043 - 1537087
Alignment:
| Q |
89 |
ttttatgttgcggttcggtttggttgttaaaataaaaatcacaaa |
133 |
Q |
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| T |
1537043 |
ttttatgttgcggtttggttcggttgttaaaataaaaaccacaaa |
1537087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 31451397 - 31451353
Alignment:
| Q |
89 |
ttttatgttgcggttcggtttggttgttaaaataaaaatcacaaa |
133 |
Q |
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| T |
31451397 |
ttttatgttgcggtttggtttggttgttaaaataaaaatcgcaaa |
31451353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 29250152 - 29250211
Alignment:
| Q |
6 |
acaaattgctaattttaccagtaacatgttgcattacatcaaaataagaaacatgtcatg |
65 |
Q |
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| T |
29250152 |
acaaattgctaattttagcattagcatgttgcattatatcaaaataagaaatatatcatg |
29250211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 3666690 - 3666648
Alignment:
| Q |
91 |
ttatgttgcggttcggtttggttgttaaaataaaaatcacaaa |
133 |
Q |
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| T |
3666690 |
ttatgttgcggttcggtttggttggtaaaacaaaaatcgcaaa |
3666648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 13715174 - 13715210
Alignment:
| Q |
90 |
tttatgttgcggttcggtttggttgttaaaataaaaa |
126 |
Q |
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| T |
13715174 |
tttatgttgcggtttggtttggttggtaaaataaaaa |
13715210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 34111403 - 34111361
Alignment:
| Q |
91 |
ttatgttgcggttcggtttggttgttaaaataaaaatcacaaa |
133 |
Q |
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| T |
34111403 |
ttatgttgcggtttggtttggttggtaaaataaaaatcacaaa |
34111361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 8557388 - 8557346
Alignment:
| Q |
91 |
ttatgttgcggttcggtttggttgttaaaataaaaatcacaaa |
133 |
Q |
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| T |
8557388 |
ttatgttgcggtttggtttggttggtaaaatgaaaatcacaaa |
8557346 |
T |
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