View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_571 (Length: 218)
Name: NF9264A_low_571
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_571 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 5484661 - 5484450
Alignment:
| Q |
1 |
tttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacataaaattacgcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5484661 |
tttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacataaaattacgtgg |
5484562 |
T |
|
| Q |
101 |
cattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5484561 |
cattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctacagatcatataaagaat |
5484462 |
T |
|
| Q |
201 |
acgagaaacttg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5484461 |
acgagaaacttg |
5484450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
| Q |
24 |
aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat |
88 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| ||||||||||| |||| ||| ||||||| |
|
|
| T |
5525652 |
aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat |
5525588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
| Q |
150 |
tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||| |||||||| ||| |||| |
|
|
| T |
5525557 |
tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact |
5525497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
| Q |
144 |
cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg |
212 |
Q |
| |
|
||||| || |||||| |||||||||||||| ||||| | ||||||||| |||||||| ||| |||||| |
|
|
| T |
20343390 |
cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg |
20343322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University