View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_577 (Length: 217)

Name: NF9264A_low_577
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_577
NF9264A_low_577
[»] chr8 (5 HSPs)
chr8 (7-92)||(4030358-4030443)
chr8 (88-138)||(4031577-4031627)
chr8 (80-138)||(12195684-12195742)
chr8 (80-138)||(12440112-12440170)
chr8 (77-137)||(15349244-15349304)
[»] chr3 (3 HSPs)
chr3 (7-138)||(11015061-11015192)
chr3 (7-137)||(11024073-11024203)
chr3 (8-137)||(11005499-11005628)
[»] chr2 (2 HSPs)
chr2 (7-91)||(29350829-29350913)
chr2 (136-197)||(29350780-29350841)
[»] chr4 (27 HSPs)
chr4 (7-138)||(49043738-49043869)
chr4 (7-137)||(48870921-48871051)
chr4 (7-137)||(48876225-48876355)
chr4 (7-138)||(45371644-45371775)
chr4 (71-138)||(49038512-49038579)
chr4 (7-137)||(48886607-48886737)
chr4 (61-137)||(7790441-7790517)
chr4 (7-138)||(48147289-48147414)
chr4 (7-138)||(48853041-48853172)
chr4 (7-138)||(48864395-48864526)
chr4 (77-138)||(7878743-7878804)
chr4 (77-137)||(7908663-7908723)
chr4 (7-138)||(45365790-45365921)
chr4 (77-137)||(7786825-7786885)
chr4 (80-138)||(48156072-48156130)
chr4 (79-137)||(50666676-50666734)
chr4 (80-133)||(7237386-7237439)
chr4 (77-138)||(7773465-7773526)
chr4 (79-128)||(37826632-37826681)
chr4 (77-138)||(45384532-45384593)
chr4 (77-137)||(7766003-7766063)
chr4 (77-133)||(7771760-7771816)
chr4 (77-137)||(7813838-7813898)
chr4 (7-137)||(48903316-48903443)
chr4 (7-138)||(48899100-48899231)
chr4 (77-134)||(50669446-50669503)
chr4 (77-137)||(7800998-7801058)
[»] chr6 (2 HSPs)
chr6 (7-138)||(21016181-21016312)
chr6 (91-131)||(14197337-14197377)
[»] chr5 (4 HSPs)
chr5 (7-138)||(9120123-9120254)
chr5 (77-139)||(42561973-42562035)
chr5 (94-138)||(179418-179462)
chr5 (46-138)||(29688489-29688581)
[»] chr7 (1 HSPs)
chr7 (77-138)||(48884184-48884245)
[»] chr1 (5 HSPs)
chr1 (77-138)||(24416138-24416199)
chr1 (77-132)||(24367531-24367586)
chr1 (77-138)||(24340771-24340832)
chr1 (77-138)||(24353136-24353197)
chr1 (77-129)||(24323139-24323191)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 4030358 - 4030443
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttag 92  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  4030358 tccaataatatcaccacttattgtagagcacattggggaaaagtacttaatggaaatgccatcaatagacagaacaagagtcttag 4030443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 4031577 - 4031627
Alignment:
Q  88 cttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 4031627  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 12195742 - 12195684
Alignment:
Q  80 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||||||||||||||| ||   |||| ||||||||||  |||||||||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12195684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 12440170 - 12440112
Alignment:
Q  80 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||||||||||||||| ||   |||| ||||||||||  |||||||||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaac 12440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 15349304 - 15349244
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    ||||||||| |||| |||||||| || | || |||| |||||||||| |||||||||||||    
T  15349304 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 11015061 - 11015192
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    |||||||||| |||||||| |||||||||| ||||||| | | |||| ||||||||||||||| ||||| || |||||||| |||  |||||| ||||||    
T  11015061 tccaataataccaccactttttgtagagcatattgggggataatactcaatggaaatgtcatcaatagataggacaagagttttaacccaagacgaatgc 11015160  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||||||||||||||||||    
T  11015161 actttgtattctttcataacccatatttcaac 11015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 11024073 - 11024203
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||||| ||||| | |||||||||| ||||||| |   |||| |||| |||||| ||| ||||| || |||||||||||||||||||| ||||||    
T  11024073 tccaataatatgaccacattttgtagagcatattgggggatcatactgaatgtaaatgtaatcaatagataggacaagagtcttagtccaagacgaatgc 11024172  T
Q  107 attttgcattctttcataacccatatttcaa 137  Q
    | |||| ||||||||||||||||||||||||    
T  11024173 actttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 11005499 - 11005628
Alignment:
Q  8 ccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgca 107  Q
    |||||||||| ||||| | ||||| |||| ||||| | |  ||||| |||| ||||| |||| ||||| |  ||||||| |||||||||||| |||||||    
T  11005499 ccaataatatgaccacattttgtaaagcatattggcggatcgtactgaatgcaaatgccatcaatagataagacaagagccttagtccaagacgaatgca 11005598  T
Q  108 ttttgcattctttcataacccatatttcaa 137  Q
     |||| ||||||||||||||||||||||||    
T  11005599 ctttgtattctttcataacccatatttcaa 11005628  T

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Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 29350913 - 29350829
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtctta 91  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||||    
T  29350913 tccaataatatcaccacctattgtagagcacattggggcaaaatacttattggaaatgccatcaatagacagaacaagagtctta 29350829  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 29350841 - 29350780
Alignment:
Q  136 aacaagagtcttattgaaaatttagagggggcacatgcccacattcttttggttgtgcatcc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29350841 aacaagagtcttattgaaaatttagagggggcacatgcccacattcttttggttgtgcatcc 29350780  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 49043738 - 49043869
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    |||||||||||||||| || ||||| | || ||||| || ||||| | | ||| |||| |||| ||||| | |||||||||||||||||| || ||||||    
T  49043738 tccaataatatcaccaatttttgtacaacatattggagcgaagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgc 49043837  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||| ||||||||||||||    
T  49043838 actttgtattctttcatcacccatatttcaac 49043869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 48871051 - 48870921
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||||||||||||| ||||| |||||| ||||| |||| ||| |  |||||||||||| | ||| |||||||||||||| |||||||| || | |    
T  48871051 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48870952  T
Q  107 attttgcattctttcataacccatatttcaa 137  Q
    | |||| |||| ||||| ||||| |||||||    
T  48870951 actttgtattcattcatcacccacatttcaa 48870921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 48876355 - 48876225
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||||||||||||| ||||| |||||| ||||| |||| ||| |  |||||||||||| | ||| |||||||||||||| |||||||| || | |    
T  48876355 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48876256  T
Q  107 attttgcattctttcataacccatatttcaa 137  Q
    | |||| |||| ||||| ||||| |||||||    
T  48876255 actttgtattcattcatcacccacatttcaa 48876225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 45371644 - 45371775
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    |||||| |||||||| ||| ||||| | |||| ||||| |||||||  | | | || | |||| ||||  ||||||| ||||||||||||||| ||||||    
T  45371644 tccaattatatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgc 45371743  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||||||||||||||||||    
T  45371744 actttgtattctttcataacccatatttcaac 45371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 49038512 - 49038579
Alignment:
Q  71 atagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||||||||||||||||||||| ||||| | |||| |||||||||| ||||||||||||||    
T  49038512 atagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 48886737 - 48886607
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||||||||||||| ||||| |||||| ||||| |||| ||| |   ||||||||||| | ||| |||||||||||||| |||||||| || | |    
T  48886737 tccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaaatgtcatcaacagaaagaacaagagtctttgtccaagacgagttc 48886638  T
Q  107 attttgcattctttcataacccatatttcaa 137  Q
    | |||| |||| ||||| ||||| |||||||    
T  48886637 actttgtattcattcatcacccacatttcaa 48886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 7790517 - 7790441
Alignment:
Q  61 aatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    |||| |||| ||||| ||||||||||| ||||||||||| ||||||| |||| |||||||||| |||||||||||||    
T  7790517 aatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 48147289 - 48147414
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||| ||||||||| |||| ||||| || |||| ||||||      || |||| |||| ||||||| |  |||||||||||||||||| ||||||    
T  48147289 tccaataatgtcaccactttttgtggagcatataggggaaaagta------gggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgc 48147382  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||| ||||||||||||||    
T  48147383 actttgtattctttcatcacccatatttcaac 48147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 48853172 - 48853041
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||||||||||||  ||||| | || ||||||| |||||| | | ||| ||||  |   | ||| ||||||||||||||||||||||| ||| ||    
T  48853172 tccaataatatcaccactctttgtacaacatattggggaaaagtagtgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgc 48853073  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||| ||||||||||||||    
T  48853072 actttgtattctttcatgacccatatttcaac 48853041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 48864526 - 48864395
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    |||||||||||| |||||| |||||||||| |  ||   |||||||  | |||||||   ||| ||||  ||||||||| ||||||||||||| ||||||    
T  48864526 tccaataatatcgccactttttgtagagcataaaggaagaaagtaccgagtggaaataaaatcaataggaagaacaagaatcttagtccaagacgaatgc 48864427  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||| ||||||||||||||    
T  48864426 actttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 7878804 - 7878743
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||| ||| ||||||||||||||| |||| |||||||||| ||||||||||||||    
T  7878804 agaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaac 7878743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 7908723 - 7908663
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    ||||||||||| ||| ||||||||||||||| |||| |||||||||| |||||||||||||    
T  7908723 agaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 45365790 - 45365921
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||||||||| ||| |||||||||| |  |||| |||||| | | ||| |||| |||| ||||  |||||  ||||||| |||||||| ||| ||    
T  45365790 tccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgc 45365889  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||  |||||||||| ||||||||||||||    
T  45365890 actttatattctttcatcacccatatttcaac 45365921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 7786885 - 7786825
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    ||||||||||||||| |||||||| ||||||  ||| |||||||||| |||||||||||||    
T  7786885 agaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 48156072 - 48156130
Alignment:
Q  80 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    |||||||| ||||||||||| ||||||| |||| |||| ||||| ||||||||||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaac 48156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 50666734 - 50666676
Alignment:
Q  79 aacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    ||||||||| ||||||||||||||||||| |||| |||||| ||| ||||||| |||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaa 50666676  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 7237386 - 7237439
Alignment:
Q  80 acaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatt 133  Q
    |||||||| ||||||||| | |||||||||||| |||||||||| |||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatatt 7237439  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 7773465 - 7773526
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||  ||| ||||||| ||||||| |||| |||||||||| ||||||||||||||    
T  7773465 agaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaac 7773526  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  79 aacaagagtcttagtccaagatgaatgcattttgcattctttcataaccc 128  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||| ||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 45384532 - 45384593
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    |||||| ||||||| |||||||| ||||||| |||  |||||||||| ||||||||||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaac 45384593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 7766063 - 7766003
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    |||||||| ||||||||||| || |||| || |||| |||||||||| |||||||||||||    
T  7766063 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 7771816 - 7771760
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatt 133  Q
    ||||||||||| |||||||| || ||||||| |||| |||||||||| |||||||||    
T  7771816 agaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 7813898 - 7813838
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    ||||||||||| ||| ||||||| ||||||| |||| |||||||||  |||||||||||||    
T  7813898 agaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 48903443 - 48903316
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    |||||| || |||||| || ||| ||| || ||||||  |||||||||  |||||||| ||   ||||||||||||  | | |||||||||||  |||||    
T  48903443 tccaatgatgtcaccattttttgaagaacatattgggtgaaagtacttggtggaaatgcca---atagacagaacacaaattttagtccaagacaaatgc 48903347  T
Q  107 attttgcattctttcataacccatatttcaa 137  Q
    | |||| |||||||||| |||||||||||||    
T  48903346 actttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 48899231 - 48899100
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    |||||||||||  |||||| ||||| |||||| ||||  ||||||| || ||| |||| |||| ||||  ||||||||||||   |||||||| || |      
T  48899231 tccaataatatagccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggatttt 48899132  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||  |||||||||| ||||||||||||||    
T  48899131 actttatattctttcatcacccatatttcaac 48899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 50669503 - 50669446
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatattt 134  Q
    |||| ||||||||||||||||||||||||||  ||| | |||||||| ||||| ||||    
T  50669503 agaataagagtcttagtccaagatgaatgcaacttggaatctttcatcacccacattt 50669446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 7801058 - 7800998
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaa 137  Q
    ||||||||||| ||| ||||||| ||||||| |||| | |||||||  |||||||||||||    
T  7801058 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 21016312 - 21016181
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    ||||||||||||||||||| ||||| | || ||||| |  || ||   | ||| ||||||||| ||||| | |  |||||||||||||||||| |||||     
T  21016312 tccaataatatcaccactttttgtacaacatattggagagaaataacgagtgggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgt 21016213  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||||||||||||||||||    
T  21016212 actttgtattctttcataacccatatttcaac 21016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  91 agtccaagatgaatgcattttgcattctttcataacccata 131  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 9120254 - 9120123
Alignment:
Q  7 tccaataatatcaccacttattgtagagcacattggggcaaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgc 106  Q
    |||||| |||||||||||| |||| || || || |||| |||   |||| |||||||| | || ||||||| ||||||||| ||  ||||||| ||||||    
T  9120254 tccaatgatatcaccactttttgttgaacatataggggaaaatagcttagtggaaatgccgtcaatagacaaaacaagagttttcttccaagaggaatgc 9120155  T
Q  107 attttgcattctttcataacccatatttcaac 138  Q
    | |||| |||||||||| ||||||||||||||    
T  9120154 actttgtattctttcatcacccatatttcaac 9120123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 42561973 - 42562035
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaaca 139  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||| ||||||    
T  42561973 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaaca 42562035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 179462 - 179418
Alignment:
Q  94 ccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaac 179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 29688581 - 29688489
Alignment:
Q  46 aaagtacttaatggaaatgtcatctatagacagaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    |||||| | ||||| ||||||| | | ||| ||||| |||||||| |||||||| || ||||  ||| ||| |||||| ||||||||||||||    
T  29688581 aaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaac 29688489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 48884245 - 48884184
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    |||||||||||||||||||||||   ||||| |||| |||||||||| ||| ||||||||||    
T  48884245 agaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaac 48884184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 24416199 - 24416138
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||| |||||||||||||| |||  |||| |||||||||| |||||||| |||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaac 24416138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 24367586 - 24367531
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatat 132  Q
    ||||||||||| ||||||||||| ||||||| |||| |||||| ||| ||||||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 24340832 - 24340771
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||| |||||||||||||| |||| |||  |||||||||| ||||| || |||||    
T  24340832 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 24353197 - 24353136
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataacccatatttcaac 138  Q
    ||||||||||| |||||||||||||| |||| |||  |||||||||| ||||| || |||||    
T  24353197 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 24323191 - 24323139
Alignment:
Q  77 agaacaagagtcttagtccaagatgaatgcattttgcattctttcataaccca 129  Q
    ||||||||||| |||||| ||||||| |||| |||| |||||||||| |||||    
T  24323191 agaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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