View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_581 (Length: 216)
Name: NF9264A_low_581
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_581 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 44575415 - 44575533
Alignment:
| Q |
82 |
tccaacaagataacctcttatttccacgttacctaacccatcaaacgtgatttcatctacatgttactgcgggaatttggattgcatgtggtcatacgat |
181 |
Q |
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| T |
44575415 |
tccaacaagataacctcttatttccacgttacctaacccatcaaacgtggtttcatctacatgttactgcgggaatttgaattgcatgtggtcatacgat |
44575514 |
T |
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| Q |
182 |
gaggatagagtcatgtgat |
200 |
Q |
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| T |
44575515 |
gaggatagagtcatgtgat |
44575533 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 44575358 - 44575402
Alignment:
| Q |
18 |
tcgtgttgctaacatattttttcaacaattagtcataaaatctttc |
63 |
Q |
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| T |
44575358 |
tcgtgatgctaacatattttttcaacaattagtcat-aaatctttc |
44575402 |
T |
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