View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_587 (Length: 215)
Name: NF9264A_low_587
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_587 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 28135987 - 28136175
Alignment:
| Q |
19 |
acatcacgacaattgtccgatcttacaaatttctagtcctaggcgtgagcgggatgtgtttaaatcccaagttggctatatagatggcaatagtgctgct |
118 |
Q |
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| T |
28135987 |
acatcacgacaattgtccgatcttacaaatttctagtcctaggcatgagcgggatgtgttaaaatcccaagttggctatatagatggcaatagtgctgct |
28136086 |
T |
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| Q |
119 |
tatagtgccttggccaatcatcatccttgttcattcttaattttaataacagtgaactactgtttagttgtgtgttgttgatgtccatc |
207 |
Q |
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| T |
28136087 |
tatagtgccttggccaatcatcatccttgttcattcttaattttaataacagtgaactactgtttagttgtgtgttgttgatgtacatc |
28136175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 28136304 - 28136432
Alignment:
| Q |
64 |
tgagcgggatgtgtttaaatcccaagttggctatatagatggcaatagtgctgcttatagtgccttggccaatcatcatccttgttcattcttaatttta |
163 |
Q |
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| T |
28136304 |
tgagcgggatgtgtttaaatcccaagtgggctatataaatggcagtagtgctgcttatagtgccttggtcaatcatcatccctgtccattcttaatttta |
28136403 |
T |
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| Q |
164 |
ataacagtgaactactgtttagttgtgtg |
192 |
Q |
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| T |
28136404 |
ataacagtgaactactttttagttctgtg |
28136432 |
T |
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