View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_588 (Length: 215)
Name: NF9264A_low_588
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_588 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 3686277 - 3686449
Alignment:
| Q |
1 |
atttgtttgaagtaacttctaactaagacatgaaacgatgataataaaaagatagacatgaaac-gatgatat------atggcataaaccatatatagt |
93 |
Q |
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| T |
3686277 |
atttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaaggcataaaccatatataat |
3686376 |
T |
|
| Q |
94 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaagaagaa |
166 |
Q |
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| T |
3686377 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaaaaagaa |
3686449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
| Q |
78 |
ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat |
152 |
Q |
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| T |
3687100 |
ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat |
3687028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3703325 - 3703388
Alignment:
| Q |
1 |
atttgtttgaagtaacttctaactaagacatgaaacgatgataataaaaagatagacatgaaac |
64 |
Q |
| |
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| T |
3703325 |
atttatttgaagtagcttgtaactaagacatgaaatgatgataacaataagataggcatgaaac |
3703388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 3686472 - 3686502
Alignment:
| Q |
183 |
caactttgttttacgatcttgctatccccct |
213 |
Q |
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| T |
3686472 |
caactttgttttacgatcttgctatccccct |
3686502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
| Q |
94 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata |
153 |
Q |
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||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||| |
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|
| T |
41979687 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata |
41979749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
| Q |
97 |
aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat |
149 |
Q |
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| T |
4432410 |
aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat |
4432462 |
T |
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