View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_590 (Length: 214)

Name: NF9264A_low_590
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_590
NF9264A_low_590
[»] chr3 (21 HSPs)
chr3 (113-201)||(19849354-19849442)
chr3 (115-201)||(20015873-20015959)
chr3 (115-188)||(19858429-19858502)
chr3 (23-94)||(19848795-19848866)
chr3 (115-183)||(20046480-20046548)
chr3 (115-166)||(17115073-17115124)
chr3 (119-184)||(24839666-24839731)
chr3 (115-187)||(19818920-19818992)
chr3 (119-195)||(19944078-19944154)
chr3 (110-194)||(19956439-19956523)
chr3 (26-94)||(20036845-20036913)
chr3 (23-91)||(26646818-26646886)
chr3 (20-99)||(20005219-20005298)
chr3 (115-194)||(20036282-20036361)
chr3 (121-181)||(19832235-19832295)
chr3 (26-78)||(19838195-19838247)
chr3 (26-78)||(19955886-19955938)
chr3 (20-91)||(19818362-19818433)
chr3 (20-78)||(19812085-19812143)
chr3 (25-78)||(26651843-26651896)
chr3 (26-78)||(19950935-19950987)
[»] chr5 (2 HSPs)
chr5 (115-201)||(9815394-9815480)
chr5 (115-201)||(26354599-26354685)
[»] chr8 (1 HSPs)
chr8 (69-107)||(22685874-22685912)
[»] chr7 (5 HSPs)
chr7 (117-166)||(12497567-12497616)
chr7 (117-166)||(12521432-12521481)
chr7 (115-183)||(12579781-12579849)
chr7 (116-183)||(12519486-12519553)
chr7 (115-165)||(12495703-12495753)
[»] chr4 (3 HSPs)
chr4 (115-172)||(6397440-6397497)
chr4 (32-72)||(6397999-6398039)
chr4 (32-72)||(6398078-6398118)
[»] chr1 (1 HSPs)
chr1 (26-81)||(1717025-1717080)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 19849354 - 19849442
Alignment:
Q  113 atcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgatattctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||||| |||||    
T  19849354 atcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggcattagactcggctatggatgattttctt 19849442  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 20015959 - 20015873
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgatattctt 201  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||  ||||||||||||||  ||||| |||||    
T  20015959 cctttattgtttaggtggcataaggttcaggctttgaaaattgacaatgttatggtggcattagactcagctattgatgattttctt 20015873  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 19858429 - 19858502
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctat 188  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||  |||||||| |||||    
T  19858429 cctttattgtttaggtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactcggctat 19858502  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 19848795 - 19848866
Alignment:
Q  23 acctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcctgtt 94  Q
    |||||||||||| |||||||||| |||||| | ||||||||||||||||||||| |||| ||| ||||||||    
T  19848795 acctttgtgttttcctttggtgaagcaacaatcactttggaggatatcatggttctagggggttatcctgtt 19848866  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 20046480 - 20046548
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 183  Q
    |||||||||||||| |||||||||||||| || ||||||||||| ||||||| |||||  |||||||||    
T  20046480 cctttattgtttaggtggcataaggttcacgcattgaaaattgataatgttaagttggcattagactca 20046548  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 17115073 - 17115124
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 166  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  17115073 cctttattgtttaggtggcatagggttcaggccgtgaaaattgacaatgtta 17115124  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 24839731 - 24839666
Alignment:
Q  119 tattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcag 184  Q
    ||||||| || |||||||| ||| |||||||||||||||||||||| |||||||  ||||||||||    
T  24839731 tattgttgaggtggcataatgttaaggccttgaaaattgacaatgtgaggttggcattagactcag 24839666  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 19818920 - 19818992
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagcta 187  Q
    ||||| |||||||| |||||| | |||||||||||| ||||||||||||||||| |||  |||||||| ||||    
T  19818920 ccttttttgtttaggtggcatgatgttcaggccttggaaattgacaatgttaggatggcattagactcggcta 19818992  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 19944078 - 19944154
Alignment:
Q  119 tattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgat 195  Q
    ||||||| || |||||||| ||| ||||||||||||||||||||||  ||||||  ||||| |||||||| ||||||    
T  19944078 tattgttgaggtggcataatgttaaggccttgaaaattgacaatgtggggttggcattagattcagctatcaatgat 19944154  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 19956439 - 19956523
Alignment:
Q  110 ggaatcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 194  Q
    |||| ||||| |||||||| |||||||||||| || |||||| | |||||||||||||| |||  |||||||| |||||| ||||    
T  19956439 ggaacccttttttgtttaggtggcataaggttaagcccttgatagttgacaatgttaggatggcattagactcggctatggatga 19956523  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 20036913 - 20036845
Alignment:
Q  26 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcctgtt 94  Q
    ||||||||| |||||||||| |||||| | | ||||||||||||||||||| |||| ||| ||||||||    
T  20036913 tttgtgttttcctttggtgaagcaacagtcattttggaggatatcatggttctaggaggttatcctgtt 20036845  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 26646818 - 26646886
Alignment:
Q  23 acctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcct 91  Q
    ||||||||| || |||||||||| |||||  ||||||||||||||||||||||||| || ||| |||||    
T  26646818 acctttgtgattgcctttggtgaagcaactattactttggaggatatcatggttttggggggttatcct 26646886  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 20005298 - 20005219
Alignment:
Q  20 aacacctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcctgttttcac 99  Q
    ||||||||||||||||  |||||||| |||||| | |||||||| ||| |||| ||||| || ||| |||||||||||||    
T  20005298 aacacctttgtgtttctatttggtgaagcaacaatcactttggaagatgtcattgttttggggggttatcctgttttcac 20005219  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 20036361 - 20036282
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 194  Q
    ||||| |||||||| |||||||||||| || ||||||  ||||||||||||||| |||  |||||||| |||||| ||||    
T  20036361 ccttttttgtttaggtggcataaggttaagcccttgatgattgacaatgttaggatggcattagactcggctatggatga 20036282  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 19832235 - 19832295
Alignment:
Q  121 ttgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagact 181  Q
    |||||||| |||||||||||| ||||||||  |||||||||||||||| |||  |||||||    
T  19832235 ttgtttaggtggcataaggttaaggccttggtaattgacaatgttaggatggcattagact 19832295  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 19838195 - 19838247
Alignment:
Q  26 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 78  Q
    ||||||||||| ||||||||||||||| | |||||||| ||| ||||||||||    
T  19838195 tttgtgtttccatttggtgaggcaacaatcactttggaagatgtcatggtttt 19838247  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 19955886 - 19955938
Alignment:
Q  26 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 78  Q
    ||||||||||| ||||||||||||||| | |||||||| ||| ||||||||||    
T  19955886 tttgtgtttccatttggtgaggcaacaatcactttggaagatgtcatggtttt 19955938  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 19818362 - 19818433
Alignment:
Q  20 aacacctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcct 91  Q
    ||||||||||| ||||| ||||||||||||||  | |||||||||||| |||| ||||| || ||| |||||    
T  19818362 aacacctttgtttttccatttggtgaggcaactatcactttggaggatgtcatagttttggggggttatcct 19818433  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 19812085 - 19812143
Alignment:
Q  20 aacacctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 78  Q
    ||||||||||| ||||| |||||||| |||||  | |||||||||||||| ||||||||    
T  19812085 aacacctttgtttttccatttggtgaagcaactatcactttggaggatattatggtttt 19812143  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 26651843 - 26651896
Alignment:
Q  25 ctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 78  Q
    |||||| ||||| ||||||||||||||| | |||||||||||| |||| |||||    
T  26651843 ctttgtttttccttttggtgaggcaacaatcactttggaggatgtcattgtttt 26651896  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 19950935 - 19950987
Alignment:
Q  26 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 78  Q
    ||||||||||| ||||||||||||||  | |||||||||||| | ||||||||    
T  19950935 tttgtgtttccatttggtgaggcaactatcactttggaggatgttatggtttt 19950987  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 9815394 - 9815480
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgatattctt 201  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||| | |||  |||||||| |||||| ||||| |||||    
T  9815394 cctttattgtttaggtgacataaggttcaggccttgaaaattgacaatgttaagctggcattagactcggctatggatgattttctt 9815480  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 26354685 - 26354599
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgatattctt 201  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||||| | |||  |||||||  ||||| |||||| |||||    
T  26354685 cctttattgtttagatggcatagggtacaagccttgaaaattgacaatgttaagctggaattagacttggctatcaatgattttctt 26354599  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 22685912 - 22685874
Alignment:
Q  69 tcatggttttaggtggtgatcctgttttcacttcacttc 107  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22685912 tcatggttttaggtggtgatcctgttttcacttcacttc 22685874  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 12497567 - 12497616
Alignment:
Q  117 tttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 166  Q
    ||||||||| || ||||||||||||| |||||||||||||| ||||||||    
T  12497567 tttattgttgaggtggcataaggttctggccttgaaaattggcaatgtta 12497616  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 12521432 - 12521481
Alignment:
Q  117 tttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 166  Q
    ||||||||| || ||||||||||||| |||||||||||||| ||||||||    
T  12521432 tttattgttgaggtggcataaggttctggccttgaaaattggcaatgtta 12521481  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 12579849 - 12579781
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 183  Q
    ||||||||| |||| | | ||||||||||||||||| ||||||||||||||| ||| |  |||||||||    
T  12579849 cctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactca 12579781  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 12519553 - 12519486
Alignment:
Q  116 ctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 183  Q
    |||||||| |||| | | ||||||||||||||||| ||||||||||||||| ||| |  |||||||||    
T  12519553 ctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactca 12519486  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 12495753 - 12495703
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtt 165  Q
    ||||||||| |||| | | ||||||||||||||||| ||||||||||||||    
T  12495753 cctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgtt 12495703  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 6397497 - 6397440
Alignment:
Q  115 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttgg 172  Q
    |||||||| ||||| ||| |||||||||||||||| |||||||||||| ||| |||||    
T  6397497 cctttattttttaggtggtataaggttcaggcctttaaaattgacaatattaagttgg 6397440  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 6398039 - 6397999
Alignment:
Q  32 tttccctttggtgaggcaacacttactttggaggatatcat 72  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  6398039 tttccctttggtgaggcaacaataactttggaggatatcat 6397999  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 6398078 - 6398118
Alignment:
Q  32 tttccctttggtgaggcaacacttactttggaggatatcat 72  Q
    ||||||||||||||||||||| | |||||| ||||||||||    
T  6398078 tttccctttggtgaggcaacaataactttgaaggatatcat 6398118  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 1717025 - 1717080
Alignment:
Q  26 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttagg 81  Q
    ||||||||||| |||||||| || ||| | |||||||||||||| |||||||||||    
T  1717025 tttgtgtttccttttggtgaagccacaatcactttggaggatattatggttttagg 1717080  T

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