View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_597 (Length: 213)
Name: NF9264A_low_597
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_597 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 7839613 - 7839784
Alignment:
| Q |
25 |
cactaagagcacaaactctttccaaagcagacctccagttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
124 |
Q |
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| T |
7839613 |
cactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
7839712 |
T |
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| Q |
125 |
gctctttctttgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcat |
196 |
Q |
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| T |
7839713 |
gctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcat |
7839784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 7762985 - 7763098
Alignment:
| Q |
66 |
ttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcatagctctttctttga-tgtctaacatcagaagcttccacctta |
164 |
Q |
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| T |
7762985 |
ttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcataactattcctctgactacctaacatctgaaggttctatctta |
7763084 |
T |
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| Q |
165 |
taaaatataacaaa |
178 |
Q |
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| T |
7763085 |
taaaaaataacaaa |
7763098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 7755532 - 7755571
Alignment:
| Q |
66 |
ttcaccttctccgattcctttccaaatctcttttcatgtt |
105 |
Q |
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| T |
7755532 |
ttcaccttctccgattcccttccaaatctcttttcatgtt |
7755571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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