View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_600 (Length: 213)
Name: NF9264A_low_600
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_600 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 36765694 - 36765481
Alignment:
| Q |
1 |
gcacaaaccatgattcttaactcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatgaaacctcaattggtggaattacatg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36765694 |
gcacaaaccatgattctgaactcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatgaaacctcaattggtggaattacatg |
36765595 |
T |
|
| Q |
101 |
cataaatctgattcttacatgcattga-nnnnnnngaagagaataaatgcataatttcattagtgcatatgcaagtaagctaccaactccagaacaaaca |
199 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||| | |||||| |||||||||||||| || |
|
|
| T |
36765594 |
cataaatctgattcttacatgcattgattttttttgaaaagaataaatgcataatttcattagtatacatgcatgcaagctatcaactccagaacaagca |
36765495 |
T |
|
| Q |
200 |
catgcaagcacata |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36765494 |
catgcaagcacata |
36765481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 36746771 - 36746695
Alignment:
| Q |
137 |
agagaataaatgcataatttcattagtgcatatgcaagtaagctaccaactccagaacaaacacatgcaagcacata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36746771 |
agagaataaatgcataatttcattagtgcatatgcatgtaagctaccaactccagaacaaacacatgcaagcacata |
36746695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 36754625 - 36754560
Alignment:
| Q |
22 |
tcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatg-aaacctcaatt |
86 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36754625 |
tcacaatggcccatttcatctaactacttccaaacctaattttacaaacacatgaaaacctcaatt |
36754560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 36747225 - 36747160
Alignment:
| Q |
22 |
tcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatg-aaacctcaatt |
86 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
36747225 |
tcacaatggcccatttcatctaactacttccaaaccaaattttacaaacacatgaaaacctcaatt |
36747160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 36770240 - 36770159
Alignment:
| Q |
137 |
agagaataaatgcataatttcattagtgcatatgcaagta-----agctaccaactccagaacaaacacatgcaagcacata |
213 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| | | ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
36770240 |
agagaataaatgcataatttcattagtacacatgcatgcatataaagctatcaactccagaacaagcacatgcaagcacata |
36770159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 36770425 - 36770381
Alignment:
| Q |
23 |
cacaatggtccatttcatctaacaactcccaaacctaattttaca |
67 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
36770425 |
cacaatggtccatttcatctaactactcccacacctaattttaca |
36770381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 36754250 - 36754214
Alignment:
| Q |
87 |
ggtggaattacatgcataaatctgattcttacatgca |
123 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36754250 |
ggtggaattacatgcataaaactgattcttacatgca |
36754214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 36746846 - 36746811
Alignment:
| Q |
92 |
aattacatgcataaatctgattcttacatgcattga |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36746846 |
aattacatgcataaaactgattcttacatgcattga |
36746811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University