View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_606 (Length: 210)

Name: NF9264A_low_606
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_606
NF9264A_low_606
[»] chr5 (6 HSPs)
chr5 (83-189)||(34378252-34378358)
chr5 (77-194)||(18593392-18593509)
chr5 (91-182)||(698522-698613)
chr5 (77-194)||(7161831-7161948)
chr5 (77-194)||(29087630-29087745)
chr5 (79-194)||(18313460-18313574)
[»] scaffold0343 (1 HSPs)
scaffold0343 (77-194)||(5855-5972)
[»] chr3 (15 HSPs)
chr3 (77-194)||(47235847-47235964)
chr3 (85-194)||(17551101-17551210)
chr3 (77-194)||(19176653-19176770)
chr3 (77-189)||(53248054-53248167)
chr3 (77-182)||(2392321-2392426)
chr3 (77-182)||(2394085-2394190)
chr3 (83-194)||(31483033-31483143)
chr3 (83-194)||(43012524-43012635)
chr3 (77-194)||(20611932-20612048)
chr3 (83-194)||(34475577-34475686)
chr3 (83-194)||(45164004-45164115)
chr3 (77-189)||(9583870-9583981)
chr3 (83-182)||(30352262-30352359)
chr3 (93-182)||(23328181-23328271)
chr3 (83-182)||(40023393-40023493)
[»] chr2 (10 HSPs)
chr2 (77-194)||(17116694-17116812)
chr2 (77-194)||(10524249-10524366)
chr2 (92-194)||(39338695-39338797)
chr2 (97-179)||(387338-387420)
chr2 (107-182)||(14106367-14106443)
chr2 (107-182)||(7460836-7460912)
chr2 (83-182)||(7874451-7874550)
chr2 (107-181)||(10173425-10173499)
chr2 (83-182)||(5254416-5254511)
chr2 (106-181)||(14405359-14405436)
[»] chr8 (16 HSPs)
chr8 (85-194)||(12898098-12898207)
chr8 (83-194)||(9519648-9519760)
chr8 (92-199)||(34388836-34388943)
chr8 (83-189)||(41893223-41893329)
chr8 (77-194)||(31207177-31207294)
chr8 (77-194)||(20138575-20138693)
chr8 (92-182)||(32066125-32066215)
chr8 (83-194)||(24995215-24995327)
chr8 (83-194)||(37986679-37986790)
chr8 (77-151)||(16457290-16457364)
chr8 (83-143)||(22773815-22773875)
chr8 (77-154)||(35821429-35821506)
chr8 (143-194)||(22773648-22773699)
chr8 (83-129)||(36631038-36631084)
chr8 (83-151)||(38577610-38577679)
chr8 (107-182)||(15821224-15821300)
[»] chr7 (17 HSPs)
chr7 (77-194)||(31971949-31972066)
chr7 (77-194)||(47325700-47325817)
chr7 (77-194)||(44353378-44353496)
chr7 (77-194)||(37795138-37795255)
chr7 (93-181)||(38306423-38306511)
chr7 (83-194)||(3867265-3867376)
chr7 (77-180)||(10244345-10244448)
chr7 (106-199)||(5860132-5860225)
chr7 (83-180)||(3419476-3419573)
chr7 (83-180)||(3419217-3419314)
chr7 (83-199)||(25160957-25161071)
chr7 (115-194)||(33435258-33435337)
chr7 (77-150)||(40726320-40726392)
chr7 (106-179)||(35745666-35745740)
chr7 (106-182)||(34390122-34390199)
chr7 (83-168)||(41089570-41089654)
chr7 (107-181)||(6585043-6585118)
[»] chr4 (9 HSPs)
chr4 (77-199)||(8255171-8255293)
chr4 (77-199)||(8268589-8268711)
chr4 (77-179)||(8705959-8706061)
chr4 (77-189)||(30167380-30167491)
chr4 (83-147)||(20464786-20464850)
chr4 (97-151)||(30964629-30964683)
chr4 (93-181)||(19673259-19673348)
chr4 (94-180)||(31050493-31050580)
chr4 (116-182)||(4305885-4305951)
[»] chr1 (13 HSPs)
chr1 (77-194)||(24449745-24449862)
chr1 (83-199)||(5459305-5459421)
chr1 (77-181)||(5389237-5389340)
chr1 (77-189)||(46692634-46692746)
chr1 (83-199)||(41920601-41920717)
chr1 (111-194)||(31585608-31585692)
chr1 (105-194)||(6764224-6764313)
chr1 (92-144)||(6804739-6804791)
chr1 (106-182)||(7857813-7857890)
chr1 (83-135)||(30685745-30685797)
chr1 (83-182)||(46814288-46814388)
chr1 (106-182)||(24659089-24659165)
chr1 (108-182)||(27031687-27031761)
[»] chr6 (3 HSPs)
chr6 (91-194)||(10541981-10542084)
chr6 (93-192)||(14663228-14663327)
chr6 (77-189)||(3117647-3117759)
[»] scaffold0068 (1 HSPs)
scaffold0068 (77-194)||(35590-35704)
[»] scaffold0172 (1 HSPs)
scaffold0172 (112-147)||(19113-19148)
[»] scaffold0063 (1 HSPs)
scaffold0063 (109-182)||(58285-58362)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 34378358 - 34378252
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  34378358 gtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacatt 34378259  T
Q  183 acgaaga 189  Q
    |||||||    
T  34378258 acgaaga 34378252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 18593509 - 18593392
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||| ||||||||||||| |||||    
T  18593509 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaagttgagc 18593410  T
Q  177 cacattacgaagaacacc 194  Q
    |||||| |||||||||||    
T  18593409 cacatttcgaagaacacc 18593392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 698613 - 698522
Alignment:
Q  91 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  698613 ggtatccaccatcgccgatcgtcactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatt 698522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 7161831 - 7161948
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| | | |||||||||  ||| ||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||| ||||||||||    
T  7161831 agcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagc 7161930  T
Q  177 cacattacgaagaacacc 194  Q
    |||||  |||||||||||    
T  7161931 cacatatcgaagaacacc 7161948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 29087745 - 29087630
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| ||||| |||||||| |||||||||||||||||||  |||||| |||||||||||||| ||| |||| ||||||| | ||| |||||    
T  29087745 agcactgtaaacacggtattcaccaccgcccatcgtcactactcacccctaaagaa-accctcaaaataaagctcccagaccccaacatctaagttgagc 29087647  T
Q  177 cacattacgaagaacacc 194  Q
    |||| |||||||| ||||    
T  29087646 caca-tacgaagagcacc 29087630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 18313460 - 18313574
Alignment:
Q  79 caccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagcca 178  Q
    ||||||||||| | |||||| ||||   |||||||||||||||||||  ||||||||||| |||  |||||||  | |||| || |||||| || |||||    
T  18313460 caccgtaaacacgatatccatcaccactcatcgtcactactcacccatgaagaacaccct-aaagaaaaactccaaaatcctaaaacccaaactaagcca 18313558  T
Q  179 cattacgaagaacacc 194  Q
    |||| |||||| ||||    
T  18313559 catttcgaagagcacc 18313574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 5972 - 5855
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  5972 agcaccgtaaacatggtatccaccacctcccatcatcactactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacccaagctgagc 5873  T
Q  177 cacattacgaagaacacc 194  Q
    ||||||||||||| ||||    
T  5872 cacattacgaagagcacc 5855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 47235964 - 47235847
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |    
T  47235964 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaac 47235865  T
Q  177 cacattacgaagaacacc 194  Q
    |||||| |||||| ||||    
T  47235864 cacatttcgaagagcacc 47235847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 17551210 - 17551101
Alignment:
Q  85 aaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattac 184  Q
    ||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |    
T  17551210 aaacaaggtaaccaccaccgcccatcgtcactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttc 17551111  T
Q  185 gaagaacacc 194  Q
    ||||| ||||    
T  17551110 gaagagcacc 17551101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 19176770 - 19176653
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| | |||| ||| |||||||||||||||    
T  19176770 agcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaacaccctcaaaataaaacacccagaccccgacacccaagctgagc 19176671  T
Q  177 cacattacgaagaacacc 194  Q
    ||||||||||||| ||||    
T  19176670 cacattacgaagagcacc 19176653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 53248167 - 53248054
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaat-aaaactctcagatcccaacacccaagctgag 175  Q
    ||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||||    
T  53248167 agcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacccaaactgag 53248068  T
Q  176 ccacattacgaaga 189  Q
    ||||||| ||||||    
T  53248067 ccacatttcgaaga 53248054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 2392321 - 2392426
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||||  ||| |||||||||||||||||||    
T  2392321 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagc 2392420  T
Q  177 cacatt 182  Q
    ||||||    
T  2392421 cacatt 2392426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 2394085 - 2394190
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||  |||||||||||||  ||| |||||||||||||||||||    
T  2394085 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacccaagctgagc 2394184  T
Q  177 cacatt 182  Q
    ||||||    
T  2394185 cacatt 2394190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 31483143 - 31483033
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||||||| |||| |||||||||| | ||||||||| |||||||||||||||    
T  31483143 gtaaacatggtatccaccactgttcatcgtcactactaacccacaaagaacacccttaaaa-aaaactctcaaaccccaacacctaagctgagccacatt 31483045  T
Q  183 acgaagaacacc 194  Q
     |||||| ||||    
T  31483044 tcgaagagcacc 31483033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 43012635 - 43012524
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||||||||| |||||||||| |||||||||||  ||||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||    
T  43012635 gtaaacacggtatccacccccgtccatcgccactactcacctccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatt 43012536  T
Q  183 acgaagaacacc 194  Q
     |||||| ||||    
T  43012535 tcgaagagcacc 43012524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 20612048 - 20611932
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||     
T  20612048 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcagaataaaactcctaga-cccaacacccaagctgagt 20611950  T
Q  177 cacattacgaagaacacc 194  Q
    |||||| |||||| ||||    
T  20611949 cacatttcgaagagcacc 20611932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 34475577 - 34475686
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||| | ||||||||| |||||||| ||||||    
T  34475577 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacacccttaaa--aaaactctcataccccaacacctaagctgagtcacatt 34475674  T
Q  183 acgaagaacacc 194  Q
     |||||| ||||    
T  34475675 tcgaagagcacc 34475686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 45164115 - 45164004
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| ||||| || ||||| |||||||||||| ||||| ||||| |||||||||||||||||||||  ||| ||||||||||||||| |||||||||    
T  45164115 gtaaacacggtattcatcaccgcccatcgtcactaatcacctacaaataacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatt 45164016  T
Q  183 acgaagaacacc 194  Q
     |||||| ||||    
T  45164015 tcgaagagcacc 45164004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 9583870 - 9583981
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||||||||||| | |||||||||||| | ||||||||||||||||  ||||||||| |||||||||||||||| |||| ||||| |||||||| ||||    
T  9583870 agcaccgtaaacacgatatccaccaccgcctatcgtcactactcaccg-caaagaacatcctcaaaataaaactcccagaccccaaaacccaagcagagc 9583968  T
Q  177 cacattacgaaga 189  Q
    |||| | ||||||    
T  9583969 cacaattcgaaga 9583981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 30352262 - 30352359
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||||||||||||  |||||||||||||||| ||||||||||||||||  ||| |||||||  ||| |||||||||||||||||||||||||    
T  30352262 gtaaacacggtatccaccaccacccatcgtcactactcatccacaaagaacaccct--aaaaaaaactccgagaccccaacacccaagctgagccacatt 30352359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 23328181 - 23328271
Alignment:
Q  93 tatccaccaccgtccatcgtcactactcacccacaaagaacacc-ctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||  ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||    
T  23328181 tatccacaaccacccatcgtcactactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacccaagctgagccacatt 23328271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 40023393 - 40023493
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccc-tcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    ||||||| ||||||||| ||| ||||||||||||||||| ||  ||||||| ||| |||||||||||||| ||||   |||||||| |||||||||||||    
T  40023393 gtaaacacggtatccacaaccatccatcgtcactactcatcccaaaagaacgcccctcaaaataaaactcccagactacaacaccctagctgagccacat 40023492  T
Q  182 t 182  Q
    |    
T  40023493 t 40023493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 17116694 - 17116812
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaat-aaaactctcagatcccaacacccaagctgag 175  Q
    ||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  17116694 agcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaacaccctcaaaataaaaactctcagaccccaacacccaagctgag 17116793  T
Q  176 ccacattacgaagaacacc 194  Q
    |||||||||||||| ||||    
T  17116794 ccacattacgaagagcacc 17116812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 10524366 - 10524249
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||    
T  10524366 agcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacccaagctgagc 10524267  T
Q  177 cacattacgaagaacacc 194  Q
    |||||  |||||| ||||    
T  10524266 cacatatcgaagagcacc 10524249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 39338695 - 39338797
Alignment:
Q  92 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattacgaagaac 191  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |||| | |||||| |    
T  39338695 gtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagc 39338794  T
Q  192 acc 194  Q
    |||    
T  39338795 acc 39338797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 387420 - 387338
Alignment:
Q  97 caccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccac 179  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  387420 caccaccgcccatcgtcactattcacccccaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccac 387338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 14106367 - 14106443
Alignment:
Q  107 catcgtcactactcacccacaaagaacaccc-tcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||   |||||||||||||||||||||||    
T  14106367 catcgtcactactcacccccaaagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacatt 14106443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 7460912 - 7460836
Alignment:
Q  107 catcgtcactactcacccacaaagaacaccc-tcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||||||||||| || |||||||||||| |||||||||||||| ||||   |||||||||||||||||||||||    
T  7460912 catcgtcactactcaaccccaaagaacacccctcaaaataaaactcccagacttcaacacccaagctgagccacatt 7460836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 7874550 - 7874451
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||||||  |||||||| |||  ||||||||||||||||||| ||||||||| |||||||||||||||||  |||   ||||||||||||||||||||||    
T  7874550 gtaaacacagtatccacaaccacccatcgtcactactcaccc-caaagaacatccctcaaaataaaactccaagacttcaacacccaagctgagccacat 7874452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 10173425 - 10173499
Alignment:
Q  107 catcgtcactactcacccacaaagaacac-cctcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||||||||||||||||| ||||||| || ||||||||| ||||||||||  | ||||||| ||||||||||||||    
T  10173425 catcgtcactactcaccc-caaagaatactcctcaaaattaaactctcagtcctcaacaccaaagctgagccacat 10173499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 5254511 - 5254416
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||||||  |||||||| |||  ||||||||||||||||||  ||||||||| |||||||   ||||||||||||   |||||||||| |||||||||||    
T  5254511 gtaaacacagtatccacaaccacccatcgtcactactcacc--caaagaacacccctcaa---aaaactctcagacttcaacacccaaactgagccacat 5254417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 14405436 - 14405359
Alignment:
Q  106 ccatcgtcactactcacccacaaa-gaaca-ccctcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||| |||||||||||||| |||| ||||| ||||||||||||||||| ||||   |||||||||||  |||||||||    
T  14405436 ccattgtcactactcacccccaaaagaacatccctcaaaataaaactcccagacttcaacacccaagtcgagccacat 14405359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 12898098 - 12898207
Alignment:
Q  85 aaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattac 184  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  12898098 aaacatggaatccacaaccgttcatcgtcactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttc 12898197  T
Q  185 gaagaacacc 194  Q
    ||||| ||||    
T  12898198 gaagagcacc 12898207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 9519760 - 9519648
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaga-tcccaacacccaagctgagccacat 181  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  9519760 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatat 9519661  T
Q  182 tacgaagaacacc 194  Q
    | |||||| ||||    
T  9519660 ttcgaagagcacc 9519648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 34388836 - 34388943
Alignment:
Q  92 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattacgaagaac 191  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||    
T  34388836 gtatccaccaccgcctatcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatgatgaagaac 34388935  T
Q  192 accaaact 199  Q
    ||| ||||    
T  34388936 acctaact 34388943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 41893223 - 41893329
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||| | |||||||||||||||||||||||    
T  41893223 gtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatt 41893322  T
Q  183 acgaaga 189  Q
     ||||||    
T  41893323 tcgaaga 41893329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 31207177 - 31207294
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |  ||||||||||||||||||    
T  31207177 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactccaacacccaagctgagc 31207276  T
Q  177 cacattacgaagaacacc 194  Q
    |||||| |||||| ||||    
T  31207277 cacatttcgaagagcacc 31207294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 20138693 - 20138575
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc-aaaataaaactctcagatcccaacacccaagctgag 175  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||| | |    
T  20138693 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccggg 20138594  T
Q  176 ccacattacgaagaacacc 194  Q
     |||||| |||||| ||||    
T  20138593 tcacatttcgaagagcacc 20138575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 32066125 - 32066215
Alignment:
Q  92 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  32066125 gtatccaccaccgcccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatt 32066215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 24995215 - 24995327
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaga-tcccaacacccaagctgagccacat 181  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||  |||  ||||||||||||||||||||| ||    
T  24995215 gtaaacacggtatccaccaccgcccatcgtcactactcacgcacaaagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatat 24995314  T
Q  182 tacgaagaacacc 194  Q
    | |||||| ||||    
T  24995315 ttcgaagagcacc 24995327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 37986679 - 37986790
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||||| ||||||  ||||||||| |||||||||||||||||||||||| ||||||||||| |||| |  ||||||||||||||||||||||    
T  37986679 gtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatt 37986778  T
Q  183 acgaagaacacc 194  Q
     |||||| ||||    
T  37986779 tcgaagagcacc 37986790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 16457290 - 16457364
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactc 151  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||    
T  16457290 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacccataaagaccaccctgaaaataaaactc 16457364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 22773875 - 22773815
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaa 143  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  22773875 gtaaacatggtaaccaccactgcccatcgtcactactcacccacaaagaacaccctcaaaa 22773815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 35821506 - 35821429
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctca 154  Q
    ||||| |||||||  ||||| | ||||| ||||| |||||||||| || ||||||||||||| |||||||||||||||    
T  35821506 agcactgtaaacacagtatctagcaccgcccatcatcactactcatcctcaaagaacacccttaaaataaaactctca 35821429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 22773699 - 22773648
Alignment:
Q  143 ataaaactctcagatcccaacacccaagctgagccacattacgaagaacacc 194  Q
    ||||||||| |||| |||||||||||| |||||||||||| |||||| ||||    
T  22773699 ataaaactcccagaccccaacacccaaactgagccacatttcgaagagcacc 22773648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 36631084 - 36631038
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaa 129  Q
    ||||||| |||||||||||||| ||||||| ||||||||||| ||||    
T  36631084 gtaaacacggtatccaccaccgcccatcgtaactactcacccccaaa 36631038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 38577610 - 38577679
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacac-cctcaaaataaaactc 151  Q
    |||||||  |||||||| | | ||||||||||||||||| || |||||||||| || |||||||||||||    
T  38577610 gtaaacacagtatccacaatcatccatcgtcactactcatccccaaagaacactccacaaaataaaactc 38577679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 15821224 - 15821300
Alignment:
Q  107 catcgtcactactcacccacaaagaacac-cctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||| |||||||||| |  ||||||||| |||||||||||||||| ||||   ||||| || ||||||||||||||    
T  15821224 catcgccactactcactccaaaagaacactcctcaaaataaaactcccagacttcaacatccgagctgagccacatt 15821300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 31971949 - 31972066
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  31971949 agcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccagaccccaacacccaagctgagc 31972048  T
Q  177 cacattacgaagaacacc 194  Q
    |||||| |||||| ||||    
T  31972049 cacatttcgaagagcacc 31972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 47325700 - 47325817
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  47325700 agcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagc 47325799  T
Q  177 cacattacgaagaacacc 194  Q
    |||||| |||||| ||||    
T  47325800 cacatttcgaagagcacc 47325817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 44353378 - 44353496
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctc-aaaataaaactctcagatcccaacacccaagctgag 175  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||| | |    
T  44353378 agcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacccaagccggg 44353477  T
Q  176 ccacattacgaagaacacc 194  Q
     |||||| |||||| ||||    
T  44353478 tcacatttcgaagagcacc 44353496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 37795255 - 37795138
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||||||||||||| ||||| | |||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  37795255 agcactgtaaacacggtatccaccaccgcccatcattactacttaaccacaaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagc 37795156  T
Q  177 cacattacgaagaacacc 194  Q
    |||| | |||||| ||||    
T  37795155 cacagttcgaagagcacc 37795138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 38306511 - 38306423
Alignment:
Q  93 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  38306511 tatccaccaccacccatcgtcactactcacctacaaagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacat 38306423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 3867376 - 3867265
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || |  |||||||||||||||||||||||     
T  3867376 gtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaacaccctcaaaataaaacttccatactccaacacccaagctgagccacata 3867277  T
Q  183 acgaagaacacc 194  Q
     |||||| ||||    
T  3867276 tcgaagagcacc 3867265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 10244448 - 10244345
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| || ||||| || |||| || ||||||||||||||||    
T  10244448 agcaccgtaaacatggtatccaccatcgcccatcgtcactactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacccaagctgagc 10244349  T
Q  177 caca 180  Q
    ||||    
T  10244348 caca 10244345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 5860132 - 5860225
Alignment:
Q  106 ccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattacgaagaacaccaaact 199  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||| |||| ||||    
T  5860132 ccatcgtcactactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaact 5860225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 3419476 - 3419573
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccaca 180  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| || | ||||||||||||| | |||||||    
T  3419476 gtaaacatgatatccaccaccgttcatcgtcactactcactcacaaagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccaca 3419573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 3419217 - 3419314
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccaca 180  Q
    ||||||||| ||||||||||||| |||| ||||||||||| |||||| |||||||| |||||||||||| || | ||||||||||||| | |||||||    
T  3419217 gtaaacatgatatccaccaccgttcatcatcactactcactcacaaaaaacacccttaaaataaaactcccaaaccccaacacccaagttaagccaca 3419314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 25161071 - 25160957
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    |||||||| |||||||||| || ||||||||||||||||||||||||||||||| | |||  |||||||||||| ||||||| | ||| |||||||||||    
T  25161071 gtaaacatagtatccaccaacgcccatcgtcactactcacccacaaagaacacctttaaa--aaaactctcagaccccaacatctaagttgagccacatt 25160974  T
Q  183 acgaagaacaccaaact 199  Q
     | |||| |||| ||||    
T  25160973 tccaagagcacctaact 25160957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 33435337 - 33435258
Alignment:
Q  115 ctactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattacgaagaacacc 194  Q
    |||||||||| |||||||||||||||||| |||||||||||| | ||||| ||||||||||||||| | |||||| ||||    
T  33435337 ctactcacccccaaagaacaccctcaaaagaaaactctcagacctcaacaaccaagctgagccacaattcgaagagcacc 33435258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 40726320 - 40726392
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaact 150  Q
    ||||| ||||||| |||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||    
T  40726320 agcacggtaaacacggtatccaccaccgcctatcatcactactcacc-acaaagaacaccctcaaaataaaact 40726392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 35745666 - 35745740
Alignment:
Q  106 ccatcgtcactactcacccacaaagaacacc-ctcaaaataaaactctcagatcccaacacccaagctgagccac 179  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||  |||||   ||||||||||||||||||||    
T  35745666 ccatcgtcactactcacccccaaagaacacctctcaaaataaaacagtcagacttcaacacccaagctgagccac 35745740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 34390199 - 34390122
Alignment:
Q  106 ccatcgtcactactcacccacaaagaacaccc-tcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    |||||||||||||||| || |||||||||||| |||||||||||||| ||||   ||||||||||| |||||||||||    
T  34390199 ccatcgtcactactcatccccaaagaacacccctcaaaataaaactcccagactacaacacccaagttgagccacatt 34390122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 41089570 - 41089654
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacaccca 168  Q
    |||||||  ||||| ||||||| |||| ||||||| | |||| |||||||||||||||||||||||||| |||| || ||||||||    
T  41089570 gtaaacacagtatctaccaccgcccattgtcactatt-acccgcaaagaacaccctcaaaataaaactcccagaccctaacaccca 41089654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 6585118 - 6585043
Alignment:
Q  107 catcgtcactactcacccacaaagaacaccc-tcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||||||||||||||||  |||| | ||||| |||||||||||||| ||||   ||||||||||||||||||||||    
T  6585118 catcgtcactactcacctccaaatagcacccctcaaaataaaactcccagacttcaacacccaagctgagccacat 6585043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 8255293 - 8255171
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  8255293 agcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagc 8255194  T
Q  177 cacattacgaagaacaccaaact 199  Q
    ||||||||||||| |||| ||||    
T  8255193 cacattacgaagagcacctaact 8255171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 8268711 - 8268589
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  8268711 agcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagc 8268612  T
Q  177 cacattacgaagaacaccaaact 199  Q
    ||||||||||||| |||| ||||    
T  8268611 cacattacgaagagcacctaact 8268589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 8705959 - 8706061
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  8705959 agcactgtaaacacagtatccaccactgcccatcgtcactacccacccacaaagaacaccctcaaaataaaactcttagaccccaacacccaagctgagc 8706058  T
Q  177 cac 179  Q
    |||    
T  8706059 cac 8706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 30167380 - 30167491
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||| || ||    
T  30167380 agcactgtaaacacggtatccaccaccg-ccaacgtcaccactcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaagttgggc 30167478  T
Q  177 cacattacgaaga 189  Q
    |||||| ||||||    
T  30167479 cacatttcgaaga 30167491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 20464850 - 20464786
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaa 147  Q
    ||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  20464850 gtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccctcaaaataaa 20464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 30964683 - 30964629
Alignment:
Q  97 caccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactc 151  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  30964683 caccaccgcccatcatcactactcacccacaaagaacaccctcaaaataaaactc 30964629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 19673348 - 19673259
Alignment:
Q  93 tatccaccaccgtccatcgtcactactcacccacaaagaacac-cctcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||||| |||| ||| |||||||||||||||| |||||||||| ||||||||| ||||||||||  | ||||||| ||| | ||||||||    
T  19673348 tatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaattaaactctcagtcctcaacaccaaagtttagccacat 19673259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 31050493 - 31050580
Alignment:
Q  94 atccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactctcagatcccaacacccaagctgagccaca 180  Q
    |||||||| | |||||||||||||||||||| ||| ||||| |||||||||||||||   ||||   ||||||||||||| |||||||    
T  31050493 atccaccatcatccatcgtcactactcacccccaaggaacacccctcaaaataaaacagccagacttcaacacccaagcttagccaca 31050580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 4305951 - 4305885
Alignment:
Q  116 tactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    |||||||||||||||| |||||| |||||||||||| || | || || ||||||| |||||||||||    
T  4305951 tactcacccacaaagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacatt 4305885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 24449745 - 24449862
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||||||||||||    
T  24449745 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacaccctcaaaataaaactcctagaccccaacacccaagctgagc 24449844  T
Q  177 cacattacgaagaacacc 194  Q
    | |||| |||||| ||||    
T  24449845 cgcatttcgaagagcacc 24449862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 5459421 - 5459305
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||||||||||||||    
T  5459421 gtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatt 5459322  T
Q  183 acgaagaacaccaaact 199  Q
     | |||| |||| ||||    
T  5459321 tcaaagagcacctaact 5459305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 5389237 - 5389340
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||  |||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  5389237 agcaccgtaaacacggtatccaccaccgcccatcgtcactactcacttacaa-gaacaccctcaaaataaaactcccagaccccaacacccaagctgagc 5389335  T
Q  177 cacat 181  Q
    |||||    
T  5389336 cacat 5389340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 46692634 - 46692746
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||    
T  46692634 agcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagaccccaacacccaagctgagc 46692733  T
Q  177 cacattacgaaga 189  Q
    |||||| ||||||    
T  46692734 cacatttcgaaga 46692746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 41920717 - 41920601
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||| ||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||||||     
T  41920717 gtaaacacggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatg 41920618  T
Q  183 acgaagaacaccaaact 199  Q
    | ||||| |||| ||||    
T  41920617 atgaagagcacctaact 41920601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 31585608 - 31585692
Alignment:
Q  111 gtcactactcacccacaaagaacaccctcaaaataaaactctcaga-tcccaacacccaagctgagccacattacgaagaacacc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| |||||| ||||    
T  31585608 gtcactactcacccacaaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacc 31585692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 6764224 - 6764313
Alignment:
Q  105 tccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattacgaagaacacc 194  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| |||| ||||  | ||||| ||||||||||| |||||| ||||    
T  6764224 tccatcgtcactactcacccacaaagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacc 6764313  T

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Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 6804791 - 6804739
Alignment:
Q  92 gtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaat 144  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  6804791 gtatccaccaccgcccatcgtcactcctcacccacaaagaacaccctgaaaat 6804739  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 7857890 - 7857813
Alignment:
Q  106 ccatcgtcactactcacccacaaagaacaccc-tcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    |||||| |||||||||||| || ||||||||| |||||||||||||| ||||   |||||||||| ||||||||||||    
T  7857890 ccatcgccactactcacccccatagaacacccctcaaaataaaactcccagacttcaacacccaaactgagccacatt 7857813  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 30685745 - 30685797
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacac 135  Q
    ||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||    
T  30685745 gtaaacacggtatccaccaccgcccatcttcactacacacccacaaagaacac 30685797  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 46814288 - 46814388
Alignment:
Q  83 gtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactctcagatcccaacacccaagctgagccacat 181  Q
    |||||||  |||||||| |||||||||||||||||||||||  |||| |||| ||||| ||||||||||| || |   ||||||||| || |||||||||    
T  46814288 gtaaacacagtatccacaaccgtccatcgtcactactcacctccaaataacacccctcgaaataaaactcccatacttcaacacccacgccgagccacat 46814387  T
Q  182 t 182  Q
    |    
T  46814388 t 46814388  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 24659165 - 24659089
Alignment:
Q  106 ccatcgtcactactcacccacaaagaaca-ccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||| |||| |  ||| |||| |||||||||||||    
T  24659165 ccatcgtcactactcacccccaaataacacccctcaaaataaaactcccaga-cttaactcccaggctgagccacatt 24659089  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 27031687 - 27031761
Alignment:
Q  108 atcgtcactactcacccacaaagaacaccc-tcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    ||||||||||||||||| || ||||||||| |||||||||||||| ||||   ||||| |||| ||||||||||||    
T  27031687 atcgtcactactcaccc-cagagaacacccctcaaaataaaactcccagacttcaacatccaaactgagccacatt 27031761  T

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Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 10542084 - 10541981
Alignment:
Q  91 ggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattacgaagaa 190  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||  |||| ||||||||||||||||||||||||| ||||||     
T  10542084 ggtatccaccaccgcccatcgtcactactcacccacaaagaataccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagag 10541985  T
Q  191 cacc 194  Q
    ||||    
T  10541984 cacc 10541981  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 14663327 - 14663228
Alignment:
Q  93 tatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagccacattacgaagaaca 192  Q
    |||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| || | ||||||| |||||| |||||||||| |||||||||    
T  14663327 tatccaccaccgcccatcgtcactactcacccgcaaagaacatcctcaaaataaaactcccaaaccccaacatccaagccgagccacatttcgaagaaca 14663228  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 3117759 - 3117647
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| ||||||| |||| |||||||||  ||||||| ||||| ||||||||||||||||||  ||||||||||| |||| ||||||||||||| |||||    
T  3117759 agcactgtaaacacggtaaccaccaccgctcatcgtctctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaagttgagc 3117660  T
Q  177 cacattacgaaga 189  Q
    |||||| ||||||    
T  3117659 cacatttcgaaga 3117647  T

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Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 35590 - 35704
Alignment:
Q  77 agcaccgtaaacatggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagatcccaacacccaagctgagc 176  Q
    ||||| |||||||  ||||||||||| | |||||||||| |||||||  | |||||||| || ||||  |||||| || | |||||||||||||||||||    
T  35590 agcactgtaaacacagtatccaccactgcccatcgtcac-actcacctgctaagaacactctaaaaa--aaactcccacaccccaacacccaagctgagc 35686  T
Q  177 cacattacgaagaacacc 194  Q
    | |||| |||||| ||||    
T  35687 ctcatttcgaagagcacc 35704  T

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Target: scaffold0172 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 19148 - 19113
Alignment:
Q  112 tcactactcacccacaaagaacaccctcaaaataaa 147  Q
    ||||||||||||||||| ||||||||||||||||||    
T  19148 tcactactcacccacaatgaacaccctcaaaataaa 19113  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 58362 - 58285
Alignment:
Q  109 tcgtcactactcacccacaaagaaca----ccctcaaaataaaactctcagatcccaacacccaagctgagccacatt 182  Q
    |||||||||||||| | |||||||||     ||||||||| ||||||||||  || |||||| |||||||||||||||    
T  58362 tcgtcactactcacacccaaagaacaacactcctcaaaattaaactctcagtcccgaacaccaaagctgagccacatt 58285  T

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