View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_623 (Length: 205)
Name: NF9264A_low_623
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_623 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 6e-76; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 4842186 - 4842369
Alignment:
| Q |
22 |
tttttcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatcttccg |
121 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||| |||||||| ||||||||||||||||||||||||||| | |
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| T |
4842186 |
tttttcatcttacaaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctg |
4842285 |
T |
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| Q |
122 |
gaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttgggagtgagccaa |
205 |
Q |
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| T |
4842286 |
gaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccaacattatttatcaaccaacttgggagtgagccaa |
4842369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 5173339 - 5173159
Alignment:
| Q |
19 |
agatttttcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatctt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |
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| T |
5173339 |
agatttttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatacttggaaggaatata------tctt |
5173246 |
T |
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| Q |
119 |
ccggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttgggagtgagccaa |
205 |
Q |
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| T |
5173245 |
ctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagccaa |
5173159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 7142606 - 7142422
Alignment:
| Q |
24 |
tttcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatcttccgga |
123 |
Q |
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| T |
7142606 |
tttcatcataccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctgga |
7142507 |
T |
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| Q |
124 |
agcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaa---cttgggagtgagccaa |
205 |
Q |
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| T |
7142506 |
agcaaaccacttaaattgttgtttgatatatccaaatgttgtatcccatcattatgtatcaaccaatttcttgggagtgagccaa |
7142422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 5196069 - 5195886
Alignment:
| Q |
24 |
tttcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatcttccgga |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||||||| ||| |
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| T |
5196069 |
tttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttgga |
5195970 |
T |
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| Q |
124 |
agcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaacca---acttgggagtgagcca |
204 |
Q |
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||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
5195969 |
agcaaaccactcaaattgttgtttgatatatccaaatatatcatgtcatcattatgtatcaaccaattacttgggagtgagcca |
5195886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 5182669 - 5182488
Alignment:
| Q |
24 |
tttcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatcttccgga |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
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| T |
5182669 |
tttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttgga |
5182570 |
T |
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| Q |
124 |
agcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttgggagtgagccaa |
205 |
Q |
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| T |
5182569 |
agcaaaccactcaaattgttgtttgatatatccaaataattcatgttatgattatctatcaaccaacttgggaatgaaccaa |
5182488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 4856686 - 4856843
Alignment:
| Q |
48 |
tatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatcttccggaagcaaaccactaaaattgttgttt |
147 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgttt |
4856785 |
T |
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| Q |
148 |
gatagatccaaatattgtatgccatcattatttatcaaccaacttgggagtgagccaa |
205 |
Q |
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|||| ||||||||| | ||| || ||||| ||||||| ||||||||| ||| |||| |
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| T |
4856786 |
gatatatccaaataattcatgttatgattatctatcaacgaacttgggaatgaaccaa |
4856843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 5214228 - 5214087
Alignment:
| Q |
22 |
tttttcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatcttccg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||| |||||||||||||||||||||||||| | |
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| T |
5214228 |
tttttcatcttaccaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttttg |
5214129 |
T |
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| Q |
122 |
gaagcaaaccactaaaattgttgtttgatagatccaaatatt |
163 |
Q |
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|||| |||||||| ||| ||||| |||||| ||||||||||| |
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| T |
5214128 |
gaagaaaaccacttaaactgttgattgatatatccaaatatt |
5214087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 5160426 - 5160243
Alignment:
| Q |
22 |
tttttcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcaaataggtaatactaggaaggaatataccaatatcttccg |
121 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| |||||||||| | ||| ||||| | |
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| T |
5160426 |
ttttttatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttg |
5160327 |
T |
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| Q |
122 |
gaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttgggagtgagccaa |
205 |
Q |
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||||| ||||| |||||||||||||||| ||||||||| | ||| || ||||| |||||||||||||||| |||||||| |
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| T |
5160326 |
ttagcaacccacttaaattgttgtttgatatatccaaataattaatgttatgattatgtatcaaccaacttggggatgagccaa |
5160243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 5203345 - 5203293
Alignment:
| Q |
153 |
atccaaatattgtatgccatcattatttatcaaccaacttgggagtgagccaa |
205 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
5203345 |
atccaaatattgtatatcatcattatgtatcaaccaacttgggaatgagccaa |
5203293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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