View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_627 (Length: 204)
Name: NF9264A_low_627
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_627 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 8e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 29408622 - 29408436
Alignment:
| Q |
18 |
aatattgctcattgcaatcatatttaagccacacatcattgatgaagttgaccatcttagcgcaaatcaccatagctaacttttttcttttgtaggaaat |
117 |
Q |
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| T |
29408622 |
aatattgctcattgcaatcatatttaagccacacatcattaatgaagttgaccatcttagcgcaaatcaccatagctaacttttttcttttgtaggaaat |
29408523 |
T |
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| Q |
118 |
ttctaaaccatatggctgacatttttggatatcttctgagaccatttttataatctacaaagtttattccagtcctcactctatagc |
204 |
Q |
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| T |
29408522 |
ttctaaaccatatggctgacatttttggatatcttttgagaccatttttataatctacaaagtttattccagtcctcactctatagc |
29408436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 29456102 - 29456183
Alignment:
| Q |
107 |
ttgtaggaaatttctaaaccatatggctgacatttttggatatcttctgagaccatttttataatctacaaagtttattcca |
188 |
Q |
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| T |
29456102 |
ttgtagaaaattcttaaaccagattgcagacatttttggatatcttttgatgccattattgtaatctacaaagtatattcca |
29456183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 29425821 - 29425705
Alignment:
| Q |
72 |
tcttagcgcaaatcaccatagctaacttttttcttttgtaggaaatttctaaaccatatggctgacatttttggatatcttctgagaccatttttataat |
171 |
Q |
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| T |
29425821 |
tcttagcgtgaatcaccatatgcaactattttatgttgtagaaaattcttgaaccatacagctgacatttttggatatcttttgaggccatcattgtaat |
29425722 |
T |
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| Q |
172 |
ctacaaagtttattcca |
188 |
Q |
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| T |
29425721 |
ctatgaagtatattcca |
29425705 |
T |
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