View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_628 (Length: 204)

Name: NF9264A_low_628
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_628
NF9264A_low_628
[»] chr4 (4 HSPs)
chr4 (18-187)||(2901798-2901967)
chr4 (18-105)||(2883142-2883229)
chr4 (18-101)||(2872944-2873027)
chr4 (152-187)||(2883043-2883078)
[»] chr2 (3 HSPs)
chr2 (18-99)||(44226436-44226517)
chr2 (18-99)||(44237234-44237315)
chr2 (18-66)||(44214266-44214314)
[»] chr7 (3 HSPs)
chr7 (26-91)||(39578189-39578254)
chr7 (35-100)||(39333840-39333905)
chr7 (20-92)||(39592655-39592727)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 2901798 - 2901967
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcactctcccagatacctttagaacacaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2901798 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat 2901897  T
Q  118 gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagatt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901898 gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagatt 2901967  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 2883229 - 2883142
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcactctcccagatacct 105  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  2883229 acatcatgttgactaatatatgcagcagttctctgaggtacaaattcatccatcccatgtccattataagttactctccctgatacct 2883142  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2873027 - 2872944
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcactctcccagat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||    
T  2873027 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccattccatatccattataagtcactctaccagat 2872944  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 2883078 - 2883043
Alignment:
Q  152 gtactcgaggggatttgaactttgtcccttaagatt 187  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2883078 gtactcgaggggatttgaactttctcccttaagatt 2883043  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44226436 - 44226517
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcactctcccag 99  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| |||| ||  ||||| || || |||||||| |||||||    
T  44226436 acatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag 44226517  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44237234 - 44237315
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcactctcccag 99  Q
    ||||||||||| || ||||| || |||||||||||||||||||| || | ||  ||||| || || |||||||| |||||||    
T  44237234 acatcatgttggctgatataagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccag 44237315  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 44214266 - 44214314
Alignment:
Q  18 acatcatgttgactaatatatgcagcagttctttgaggtacaaattcat 66  Q
    |||||||| || || ||||| ||||||||||||||||||||||| ||||    
T  44214266 acatcatgctggctgatataagcagcagttctttgaggtacaaactcat 44214314  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 39578189 - 39578254
Alignment:
Q  26 ttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcac 91  Q
    |||||| | ||| ||||||||||||||||||||||| |||| |||| |||| ||||| ||||||||    
T  39578189 ttgactgacataagcagcagttctttgaggtacaaactcattcatctcatgaccgttgtaagtcac 39578254  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 39333905 - 39333840
Alignment:
Q  35 atatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcactctcccaga 100  Q
    |||||||||||||||||| || |||||||||  |||| |||| || ||||||||||| || |||||    
T  39333905 atatgcagcagttctttgggggacaaattcactcatctcatgaccattataagtcacccttccaga 39333840  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39592655 - 39592727
Alignment:
Q  20 atcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccgttataagtcact 92  Q
    ||||| |||||| | ||| |||||||||||||| ||||||||||| | |||| |||| || |||||| |||||    
T  39592655 atcattttgactgacataagcagcagttctttggggtacaaattctttcatctcatgaccattataactcact 39592727  T

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