View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_631 (Length: 204)
Name: NF9264A_low_631
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_631 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 48714908 - 48715022
Alignment:
| Q |
69 |
ataattttctggtacttgcatgtattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctacta |
168 |
Q |
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| T |
48714908 |
ataattttctggtacttgcatgtattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctacta |
48715007 |
T |
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| Q |
169 |
ttggagctgctggat |
183 |
Q |
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| T |
48715008 |
ttggagctgctggat |
48715022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 48702507 - 48702607
Alignment:
| Q |
91 |
tattatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttctactattggagctgctggatattcttg |
190 |
Q |
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| T |
48702507 |
tattacatttacaggacaaaggttttgaagcttcccaaccaataattgaagccttaaaaagtaaaggtgtttctgctattggagctgctggttattgttg |
48702606 |
T |
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| Q |
191 |
g |
191 |
Q |
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| T |
48702607 |
g |
48702607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 48688231 - 48688301
Alignment:
| Q |
93 |
ttatatttataggagacaggttttgaagtttcacaacccataattgaagccttgaaaagtaaaggtatttc |
163 |
Q |
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| T |
48688231 |
ttatattaataggacaaaggttttgaagatgcaaaacccataattgaagccataaaaagtaaaggtgtttc |
48688301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 32150450 - 32150407
Alignment:
| Q |
129 |
cccataattgaagccttgaaaagtaaaggtatttctactattgg |
172 |
Q |
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| T |
32150450 |
cccataattgaagccttaaaaagtaaaggtgtttctgctattgg |
32150407 |
T |
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