View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264A_low_634 (Length: 203)

Name: NF9264A_low_634
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264A_low_634
NF9264A_low_634
[»] chr7 (13 HSPs)
chr7 (94-185)||(31971947-31972038)
chr7 (94-185)||(47325698-47325789)
chr7 (94-185)||(44353376-44353468)
chr7 (101-190)||(3419475-3419564)
chr7 (95-185)||(10244359-10244449)
chr7 (95-185)||(37795166-37795256)
chr7 (94-190)||(3419209-3419305)
chr7 (94-185)||(5860101-5860192)
chr7 (106-185)||(38306438-38306517)
chr7 (99-185)||(3867293-3867379)
chr7 (94-169)||(40726318-40726392)
chr7 (101-185)||(41089569-41089652)
chr7 (94-183)||(25160992-25161079)
[»] chr5 (6 HSPs)
chr5 (94-190)||(18593415-18593511)
chr5 (94-183)||(29087659-29087747)
chr5 (101-185)||(34378275-34378359)
chr5 (109-185)||(698538-698614)
chr5 (94-184)||(7161829-7161919)
chr5 (102-157)||(18313464-18313519)
[»] chr1 (11 HSPs)
chr1 (94-185)||(46692632-46692723)
chr1 (94-185)||(24449743-24449834)
chr1 (98-185)||(5459338-5459425)
chr1 (94-185)||(5389235-5389325)
chr1 (94-185)||(41920634-41920725)
chr1 (98-138)||(31584854-31584894)
chr1 (94-157)||(6804745-6804808)
chr1 (126-180)||(6764226-6764280)
chr1 (130-179)||(31585608-31585657)
chr1 (94-154)||(30685737-30685797)
chr1 (100-140)||(24684310-24684350)
[»] chr2 (10 HSPs)
chr2 (94-185)||(10524277-10524368)
chr2 (95-185)||(17116693-17116784)
chr2 (94-185)||(39338679-39338769)
chr2 (117-185)||(387351-387419)
chr2 (101-185)||(14106342-14106427)
chr2 (119-190)||(16952222-16952294)
chr2 (119-190)||(17022887-17022959)
chr2 (119-190)||(17060193-17060265)
chr2 (98-185)||(7460852-7460940)
chr2 (98-185)||(7874467-7874554)
[»] chr3 (15 HSPs)
chr3 (94-185)||(47235875-47235966)
chr3 (95-185)||(2392320-2392410)
chr3 (95-185)||(2394084-2394174)
chr3 (94-185)||(53248077-53248169)
chr3 (94-178)||(20611966-20612050)
chr3 (94-185)||(19176681-19176772)
chr3 (104-185)||(17551129-17551210)
chr3 (94-185)||(30352254-30352343)
chr3 (94-185)||(34475569-34475658)
chr3 (94-181)||(9583868-9583954)
chr3 (94-185)||(45164032-45164123)
chr3 (94-185)||(43012552-43012643)
chr3 (95-185)||(31483061-31483150)
chr3 (126-185)||(23328195-23328255)
chr3 (98-185)||(40023389-40023477)
[»] chr6 (3 HSPs)
chr6 (94-190)||(3117665-3117761)
chr6 (94-185)||(10542009-10542100)
chr6 (95-183)||(14663256-14663344)
[»] chr8 (13 HSPs)
chr8 (98-179)||(9519683-9519764)
chr8 (94-179)||(24995207-24995292)
chr8 (94-185)||(20138603-20138695)
chr8 (105-185)||(32066119-32066199)
chr8 (94-177)||(37986671-37986754)
chr8 (95-185)||(31207176-31207266)
chr8 (94-173)||(16457288-16457367)
chr8 (94-185)||(41893215-41893306)
chr8 (95-185)||(34388821-34388910)
chr8 (120-185)||(12898114-12898179)
chr8 (94-158)||(22773819-22773883)
chr8 (94-170)||(35821432-35821508)
chr8 (98-141)||(36631045-36631088)
[»] chr4 (6 HSPs)
chr4 (94-190)||(30167378-30167473)
chr4 (94-185)||(8255204-8255295)
chr4 (94-185)||(8268622-8268713)
chr4 (94-185)||(8705957-8706048)
chr4 (97-174)||(30964625-30964702)
chr4 (100-166)||(20464786-20464852)
[»] scaffold0343 (1 HSPs)
scaffold0343 (94-185)||(5883-5974)
[»] scaffold0172 (1 HSPs)
scaffold0172 (99-166)||(19113-19177)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 31971947 - 31972038
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  31971947 caagcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccagaccccaacacc 31972038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 47325698 - 47325789
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||| ||||| | || ||| |||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  47325698 caagcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagaccccaacacc 47325789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 44353376 - 44353468
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctc-caaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||  | |||||||||||||  ||||||||||||||||||||||||||    
T  44353376 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacc 44353468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 3419475 - 3419564
Alignment:
Q  101 tgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||||||| | |||| ||||||| ||||||||||||||||| || ||||||||||||  |||||||||||||| ||||||||||| ||||    
T  3419475 tgtaaacatgatatccaccaccgttcatcgtcactactcactcacaaagaacacccttaaaataaaactcccaaaccccaacacccaagt 3419564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 10244449 - 10244359
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||| ||||||| |||||| |||| ||| |||||||||||||||| || ||||| |||||||||| ||||| |||||||||| ||||||    
T  10244449 aagcaccgtaaacatggtatccaccatcgcccatcgtcactactcacccacaaagaccaccctccaactaaaaatcccagacccaaacacc 10244359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 37795256 - 37795166
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||||||||| |||||||| |||| | |||||| |  || ||||||||||||| ||||||||||| || |||||||||||    
T  37795256 aagcactgtaaacacggtatccaccaccgcccatcattactacttaaccacaaagaacaccctcaaaataaaactctcaaaccccaacacc 37795166  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 3419209 - 3419305
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||||| |||||||| | |||| ||||||| ||||| ||||||||||| || ||| ||||||||  |||||||||||||| ||||||||||| ||||    
T  3419209 caagcattgtaaacatgatatccaccaccgttcatcatcactactcactcacaaaaaacacccttaaaataaaactcccaaaccccaacacccaagt 3419305  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 5860101 - 5860192
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||| | ||||||||||  ||||  || |||||||||||||||  || ||||||||||||  ||||||||||||||||||||||||||    
T  5860101 caagcactattaacacggtattcaccattgcccatcgtcactactcatccacaaagaacaccctgaaaataaaactcccagaccccaacacc 5860192  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 38306517 - 38306438
Alignment:
Q  106 acacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||| |||| |||||| | ||||||||||||||||  | ||||||||||||| ||||||||||| ||||||||||||||    
T  38306517 acacgatatccaccaccacccatcgtcactactcacctacaaagaacaccctcaaaataaaactcacagaccccaacacc 38306438  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 3867379 - 3867293
Alignment:
Q  99 actgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||| |||| |||||||  |||||||||||||||| |  ||||||||||||| |||||||||| ||| || ||||||||    
T  3867379 actgtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaacaccctcaaaataaaacttccatactccaacacc 3867293  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 40726318 - 40726392
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaact 169  Q
    ||||||| |||||||||||||| ||||||||  ||| ||||||||||| || ||||||||||||| ||||||||||    
T  40726318 caagcacggtaaacacggtatccaccaccgcctatcatcactactcac-cacaaagaacaccctcaaaataaaact 40726392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 41089569 - 41089652
Alignment:
Q  101 tgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||| ||||| |||||||| ||| ||||||| | || |  ||||||||||||| ||||||||||||||||||| ||||||    
T  41089569 tgtaaacacagtatctaccaccgcccattgtcactatt-acccgcaaagaacaccctcaaaataaaactcccagaccctaacacc 41089652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 25161079 - 25160992
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaaca 183  Q
    |||||| ||||||||  ||||| |||| ||| |||||||||||||||| || |||||||||| |   || ||||||| ||||||||||||    
T  25161079 caagcaatgtaaacatagtatccaccaacgcccatcgtcactactcacccacaaagaacacctt--taaaaaaactctcagaccccaaca 25160992  T

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Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 18593511 - 18593415
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||    
T  18593511 caagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaataaaactcccagaccccaacacccaagt 18593415  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 29087747 - 29087659
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaaca 183  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||| | ||||||| |||||| ||||||| ||||||||||||||||    
T  29087747 caagcactgtaaacacggtattcaccaccgcccatcgtcactactcacccctaaagaa-accctcaaaataaagctcccagaccccaaca 29087659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 34378359 - 34378275
Alignment:
Q  101 tgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||| |||||||  |||||||||||||||| || ||||||||||||| ||||||||||| || |||||||||||    
T  34378359 tgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcaaaccccaacacc 34378275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 698614 - 698538
Alignment:
Q  109 cggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||| |||| |||  ||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  698614 cggtatccaccatcgccgatcgtcactactcacccacaaagaacaccctccaaataaaactctcagaccccaacacc 698538  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 7161829 - 7161919
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacac 184  Q
    ||||||||||||||||| | || |||||| | || ||||||||||||| |  |||||||||| || |||||||||||||||||||||||||    
T  7161829 caagcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaacaccatcaaaataaaactcccagaccccaacac 7161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 18313464 - 18313519
Alignment:
Q  102 gtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccct 157  Q
    ||||||||| |||| | |||| |||||||||||||||||| ||| |||||||||||    
T  18313464 gtaaacacgatatccatcaccactcatcgtcactactcacccatgaagaacaccct 18313519  T

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Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 46692632 - 46692723
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||    
T  46692632 caagcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaacttccagaccccaacacc 46692723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 24449743 - 24449834
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| || ||| ||||||||| |||||||||||| |||||||||||||    
T  24449743 caagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacaccctcaaaataaaactcctagaccccaacacc 24449834  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 5459425 - 5459338
Alignment:
Q  98 cactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||||| |||||||| |||||||||||||||| || |||||||||| || |||||||||| |||||||||||||||    
T  5459425 cactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccatcaaaataaaacttccagaccccaacacc 5459338  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 5389235 - 5389325
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||  |  |||||||||||| ||||||||||||||||||||||||||    
T  5389235 caagcaccgtaaacacggtatccaccaccgcccatcgtcactactcactta-caagaacaccctcaaaataaaactcccagaccccaacacc 5389325  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 41920725 - 41920634
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||| ||||||||||||||  ||||||||  ||||||||||||||| || ||| ||||||||| |||||||||||| |||||||||||||    
T  41920725 caagcaatgtaaacacggtattcaccaccgcctatcgtcactactcacccacaaaaaacaccctcaaaataaaactccaagaccccaacacc 41920634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 31584854 - 31584894
Alignment:
Q  98 cactgtaaacacggtatcaaccaccgctcatcgtcactact 138  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  31584854 cactgtaaacacggtatccaccaccgctcatcgtcactact 31584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 6804808 - 6804745
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccct 157  Q
    ||||||||||||| || ||||| |||||||| |||||||||| ||||| || ||||||||||||    
T  6804808 caagcactgtaaatacagtatccaccaccgcccatcgtcactcctcacccacaaagaacaccct 6804745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 6764226 - 6764280
Alignment:
Q  126 catcgtcactactcacacataaagaacaccctccaaataaaactcccagacccca 180  Q
    |||||||||||||||| || |||||||| |||  |||||||||||||||||||||    
T  6764226 catcgtcactactcacccacaaagaacatcctgaaaataaaactcccagacccca 6764280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 31585608 - 31585657
Alignment:
Q  130 gtcactactcacacataaagaacaccctccaaataaaactcccagacccc 179  Q
    |||||||||||| || ||||||||||||| ||||||||||| ||||||||    
T  31585608 gtcactactcacccacaaagaacaccctcaaaataaaactctcagacccc 31585657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 30685737 - 30685797
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacac 154  Q
    |||||| ||||||||||||||| |||||||| |||| ||||||| ||| || |||||||||    
T  30685737 caagcaatgtaaacacggtatccaccaccgcccatcttcactacacacccacaaagaacac 30685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 24684310 - 24684350
Alignment:
Q  100 ctgtaaacacggtatcaaccaccgctcatcgtcactactca 140  Q
    ||||||||||| |||| |||||||| |||||||||||||||    
T  24684310 ctgtaaacacgatatccaccaccgcccatcgtcactactca 24684350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 10524368 - 10524277
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||    
T  10524368 caagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctccaaataaaactcccaaaccccaacacc 10524277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 17116693 - 17116784
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaat-aaaactcccagaccccaacacc 185  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||||| || ||||||||||||| |||| ||||||| ||||||||||||||    
T  17116693 aagcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaacaccctcaaaataaaaactctcagaccccaacacc 17116784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 39338679 - 39338769
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||| | |||| |||| ||| |||||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||    
T  39338679 caagcactgtaaacaag-tatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccagacctcaacacc 39338769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 387419 - 387351
Alignment:
Q  117 accaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||| ||||||||||| |||| |  ||||||||||||| ||||||||||||||||||||||||||    
T  387419 accaccgcccatcgtcactattcacccccaaagaacaccctcaaaataaaactcccagaccccaacacc 387351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 14106342 - 14106427
Alignment:
Q  101 tgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaaca-ccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||| ||||| || ||| |||||||||||||||||| |  |||||||| ||||| ||||||||||| |||||  |||||||    
T  14106342 tgtaaacacagtatccacaaccactcatcgtcactactcacccccaaagaacacccctcaaaataaaactctcagacttcaacacc 14106427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 16952222 - 16952294
Alignment:
Q  119 caccgctcatcgtcactactcacacataaagaaca-ccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||| |||||||||||||||||| |  |||||||| ||||| |||| |||||||||| || ||||||||||||    
T  16952222 caccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagt 16952294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 17022887 - 17022959
Alignment:
Q  119 caccgctcatcgtcactactcacacataaagaaca-ccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||| |||||||||||||||||| |  |||||||| ||||| |||| |||||||||| || ||||||||||||    
T  17022887 caccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagt 17022959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 17060193 - 17060265
Alignment:
Q  119 caccgctcatcgtcactactcacacataaagaaca-ccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||| |||||||||||||||||| |  |||||||| ||||| |||| |||||||||| || ||||||||||||    
T  17060193 caccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagt 17060265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 7460940 - 7460852
Alignment:
Q  98 cactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccc-tccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||  |||| || ||| | |||||||||||||||  |  ||||||||||| || |||||||||||||||||  |||||||    
T  7460940 cactgtaaacacaatatccacaaccacacatcgtcactactcaaccccaaagaacacccctcaaaataaaactcccagacttcaacacc 7460852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 7874554 - 7874467
Alignment:
Q  98 cactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaaca-ccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||| ||||| || ||| | |||||||||||||||| |  |||||||| ||||| |||||||||||| ||||  |||||||    
T  7874554 cactgtaaacacagtatccacaaccacccatcgtcactactcac-cccaaagaacatccctcaaaataaaactccaagacttcaacacc 7874467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 3e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 47235966 - 47235875
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||| || ||||||||||||| ||||||||||| ||||||||||||||    
T  47235966 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaacaccctcaaaataaaactcgcagaccccaacacc 47235875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 2392320 - 2392410
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||| || ||| ||||||  | |||||||||||| |||||||||||||    
T  2392320 aagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacc 2392410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 2394084 - 2394174
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||| || ||| ||||||  | |||||||||||| |||||||||||||    
T  2394084 aagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataacacctacaaaataaaactcctagaccccaacacc 2394174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 53248169 - 53248077
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaat-aaaactcccagaccccaacacc 185  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||| || ||||||||| ||| |||| ||||||| ||||||||||||||    
T  53248169 caagcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaacactctcaaaataaaaactctcagaccccaacacc 53248077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 20612050 - 20611966
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccc 178  Q
    |||||||||||||||| ||||| |||| ||| |||||||||||||||| || |||||||||||||  ||||||||||| ||||||    
T  20612050 caagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcagaataaaactcctagaccc 20611966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 19176772 - 19176681
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||| |||||||| ||||| ||||||   |||||||||||||||| | |||||||||||||| ||||||||| |||||||||| |||||    
T  19176772 caagcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaacaccctcaaaataaaacacccagaccccgacacc 19176681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 17551210 - 17551129
Alignment:
Q  104 aaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||| |||| | |||||||| ||||||||||||||||  | ||||||||||||| ||||||||||| ||||||||||||||    
T  17551210 aaacaaggtaaccaccaccgcccatcgtcactactcaccgacaaagaacaccctcaaaataaaactctcagaccccaacacc 17551129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 30352254 - 30352343
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||  || ||||||||||||  ||| |||||||| |||||||||||||    
T  30352254 caagtactgtaaacacggtatccaccaccacccatcgtcactactcatccacaaagaacaccct--aaaaaaaactccgagaccccaacacc 30352343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 34475569 - 34475658
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||   || ||||||| || |||||||||||    
T  34475569 caagcaatgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccct--taaaaaaactctcataccccaacacc 34475658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 9583868 - 9583954
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaa 181  Q
    ||||||| ||||||||| |||| ||||||||  ||||||||||||||| |  |||||||| |||| ||||||||||||||||||||||    
T  9583868 caagcaccgtaaacacgatatccaccaccgcctatcgtcactactcac-cgcaaagaacatcctcaaaataaaactcccagaccccaa 9583954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 45164123 - 45164032
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||| ||||||||||||||  | |||||| ||||||||||| ||||  | ||| ||||||||| |||||||||||| |||||||||||||    
T  45164123 caagcattgtaaacacggtattcatcaccgcccatcgtcactaatcacctacaaataacaccctcaaaataaaactcctagaccccaacacc 45164032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 43012643 - 43012552
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||| ||||||||||||||| ||| |||  ||||| ||||||||||    ||||||||||||| || ||||||||| |||||||||||||    
T  43012643 caagcattgtaaacacggtatccacccccgtccatcgccactactcacctccaaagaacaccctcaaattaaaactcctagaccccaacacc 43012552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 31483150 - 31483061
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||| |||||||| |||||| ||||| | |||||||||||||| || || ||||||||||||  ||| ||||||| || |||||||||||    
T  31483150 aagcaatgtaaacatggtatccaccactgttcatcgtcactactaacccacaaagaacaccct-taaaaaaaactctcaaaccccaacacc 31483061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 23328195 - 23328255
Alignment:
Q  126 catcgtcactactcacacataaagaacacc-ctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||| |  |||||||||| ||| |||||||||||||||||  |||||||    
T  23328195 catcgtcactactcacccccaaagaacaccactcaaaataaaactcccagacttcaacacc 23328255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 40023389 - 40023477
Alignment:
Q  98 cactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaac-accctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||||| || |||   |||||||||||||||  |  |||||||  ||||| |||||||||||||||||  |||||||    
T  40023389 cactgtaaacacggtatccacaaccatccatcgtcactactcatcccaaaagaacgcccctcaaaataaaactcccagactacaacacc 40023477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 3117761 - 3117665
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||||||||||||||||||| | |||||||||||||||| ||||| || || ||||||||||||  |||||||||||||||||||||||||| ||||    
T  3117761 caagcactgtaaacacggtaaccaccaccgctcatcgtctctacttacccacaaagaacaccctataaataaaactcccagaccccaacacccaagt 3117665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 10542100 - 10542009
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||| |||| |||||||| |||||||| |||||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||    
T  10542100 caagcactttaaatacggtatccaccaccgcccatcgtcactactcacccacaaagaataccctccaaataaaacttccagaccccaacacc 10542009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 14663344 - 14663256
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaaca 183  Q
    |||||||||||||||  |||| |||||||| |||||||||||||||| |  |||||||| |||| |||||||||||||| |||||||||    
T  14663344 aagcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaacatcctcaaaataaaactcccaaaccccaaca 14663256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 9519764 - 9519683
Alignment:
Q  98 cactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagacccc 179  Q
    |||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||| ||||||||||| ||||||||    
T  9519764 cactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactctcagacccc 9519683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 24995207 - 24995292
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagacccc 179  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||| |||||||||||| |||||||    
T  24995207 caagcattgtaaacacggtatccaccaccgcccatcgtcactactcacgcacaaagaacaccctcaaaataaaactcctagacccc 24995292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 20138695 - 20138603
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctc-caaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||  | |||||||||||||  ||||||||||||||||||||||||||    
T  20138695 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaacaccctcaaaaataaaactcccagaccccaacacc 20138603  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 32066119 - 32066199
Alignment:
Q  105 aacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||| ||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  32066119 aacactgtatccaccaccgcccatcgtcactactcactcacaaagaacaccctccaaataaaactctcagaccccaacacc 32066199  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 37986671 - 37986754
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagacc 177  Q
    |||||| ||||||||||||||| |||||| | |||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  37986671 caagcattgtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaataaaactcccagacc 37986754  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 31207176 - 31207266
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||||||||||| ||||| |||| ||| |||||||||||||||| || ||||||||||||| |||||||||||||| || ||||||||    
T  31207176 aagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcccatactccaacacc 31207266  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 16457288 - 16457367
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactccca 173  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||| |||||||| ||||||  ||||||||||||||    
T  16457288 caagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccataaagaccaccctgaaaataaaactccca 16457367  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 41893215 - 41893306
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||| ||||||||||||||||| |||||||  |||||||||||||||| || ||||||||||||  ||||| |||||||||||| |||||||    
T  41893215 caagaactgtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaacaccctgaaaatagaactcccagacctcaacacc 41893306  T

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Target: chr8; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 34388821 - 34388910
Alignment:
Q  95 aagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||| |||||||||| |||| ||||||||  ||||||||||||||| || ||||||||||||| ||||||||||| || |||||||||||    
T  34388821 aagcaatgtaaacacg-tatccaccaccgcctatcgtcactactcacccacaaagaacaccctcaaaataaaactctcataccccaacacc 34388910  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 12898114 - 12898179
Alignment:
Q  120 accgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||| ||||||||||||||||| || ||||||||||||| |||||||||||  |||||||||||||    
T  12898114 accgttcatcgtcactactcacccacaaagaacaccctcaaaataaaactctaagaccccaacacc 12898179  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 22773883 - 22773819
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctc 158  Q
    |||||| |||||||| |||| | ||||| || |||||||||||||||| || |||||||||||||    
T  22773883 caagcattgtaaacatggtaaccaccactgcccatcgtcactactcacccacaaagaacaccctc 22773819  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 35821508 - 35821432
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactc 170  Q
    |||||||||||||||| ||||| | |||||| |||| ||||||||||  |  ||||||||||||  |||||||||||    
T  35821508 caagcactgtaaacacagtatctagcaccgcccatcatcactactcatcctcaaagaacacccttaaaataaaactc 35821432  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 36631088 - 36631045
Alignment:
Q  98 cactgtaaacacggtatcaaccaccgctcatcgtcactactcac 141  Q
    |||||||||||||||||| |||||||| |||||| |||||||||    
T  36631088 cactgtaaacacggtatccaccaccgcccatcgtaactactcac 36631045  T

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Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 30167378 - 30167473
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacaccaaagt 190  Q
    |||||||||||||||||||||| |||||||| || |||||| |||||| || ||||||||||||| |||||||||||||| ||||||||||| ||||    
T  30167378 caagcactgtaaacacggtatccaccaccgc-caacgtcaccactcacccacaaagaacaccctcaaaataaaactcccataccccaacacccaagt 30167473  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 8255295 - 8255204
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||| ||||| |||||  | |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| ||||||    
T  8255295 caagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacc 8255204  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 8268713 - 8268622
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||| ||||| |||||  | |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| ||||||    
T  8268713 caagcactgtaaacacagtatccaccacatcccatcgtcactactcacccacaaagaacaccctcaaaataaaactcacagaccctaacacc 8268622  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 8705957 - 8706048
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    |||||||||||||||| ||||| ||||| || |||||||||||| ||| || ||||||||||||| |||||||||||  |||||||||||||    
T  8705957 caagcactgtaaacacagtatccaccactgcccatcgtcactacccacccacaaagaacaccctcaaaataaaactcttagaccccaacacc 8706048  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 30964702 - 30964625
Alignment:
Q  97 gcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccag 174  Q
    |||||||||| ||| |||  |||||||| |||| ||||||||||| || ||||||||||||| |||||||||||||||    
T  30964702 gcactgtaaatacgatattcaccaccgcccatcatcactactcacccacaaagaacaccctcaaaataaaactcccag 30964625  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 20464852 - 20464786
Alignment:
Q  100 ctgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaa 166  Q
    |||||||||||||||| |||||||| |||||||||||||||| |  ||| ||||||||| |||||||    
T  20464852 ctgtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccctcaaaataaa 20464786  T

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Target: scaffold0343 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 5974 - 5883
Alignment:
Q  94 caagcactgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaaactcccagaccccaacacc 185  Q
    ||||||| ||||||| |||||| |||||| | |||| ||||||||||| || ||| ||||||||| |||||||||||||||| |||||||||    
T  5974 caagcaccgtaaacatggtatccaccacctcccatcatcactactcacccacaaaaaacaccctcaaaataaaactcccagatcccaacacc 5883  T

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Target: scaffold0172 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 19177 - 19113
Alignment:
Q  99 actgtaaacacggtatcaaccaccgctcatcgtcactactcacacataaagaacaccctccaaataaa 166  Q
    ||||||||||||||||| |||||||||||   ||||||||||| || || |||||||||| |||||||    
T  19177 actgtaaacacggtatctaccaccgctca---tcactactcacccacaatgaacaccctcaaaataaa 19113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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