View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_70 (Length: 387)
Name: NF9264A_low_70
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 187 - 381
Target Start/End: Original strand, 44407221 - 44407419
Alignment:
| Q |
187 |
tttgagattcatacaaacaaaaaattaaaatatgcagaagtttaaagttctattggttctattcctctcagtatgccaaggtgctttgtcttatacagat |
286 |
Q |
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| T |
44407221 |
tttgagattcatacaaacaaaaaattaaaatatgcagaagtttaaagttctattggttctattcctctcagtatgccaaggtgctttgtcttatacagat |
44407320 |
T |
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| Q |
287 |
ggtaagttcttaattcccaacactatatgcaatgtagtggtgttttgatttcaatca----acttaattcattgatgttagtatttattgctaactaat |
381 |
Q |
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| T |
44407321 |
ggtaagttcttaattcccaacactatatgcaatgtaatggtgttttgatttcaatcaccttaattaattcattgatgttagtatttattgctaactaat |
44407419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 44407030 - 44407160
Alignment:
| Q |
1 |
aacatgtatgtattcagggcaaagccatctcttgctggaaaatttaggataggatagttccagtggcattgatgttattttttgctgaatttagtggcat |
100 |
Q |
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| T |
44407030 |
aacatgtatgtattcagggcaaagccatctcttgctggaaaatttaggataggatagttccagtggcattgatgttattttttgctgaatttagtggcat |
44407129 |
T |
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| Q |
101 |
tttcattttatgattcaaataaaaccctgtg |
131 |
Q |
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| T |
44407130 |
tttcattttatgattcaaataaaaccctgtg |
44407160 |
T |
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