View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_75 (Length: 384)
Name: NF9264A_low_75
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 48670401 - 48670756
Alignment:
| Q |
10 |
atcaggaaaatttgatgaaggaagtctagaattccaaaagaggatagtaatgtcatcaggaataggtgatgaaacatacattccaagatcagtgatatca |
109 |
Q |
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| T |
48670401 |
atcaggaaaatttgatgaaggaagtctagaattccaaaagaggatagtaatgtcatcaggaataggtgatgaaacatacattccaagatcagtgatatca |
48670500 |
T |
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| Q |
110 |
tcaagtgaaaacacagcaacaatgaaagaaggtagagctgaggcatcaatggttatgtttggagcacttgatgaactctttgaaaaaacaggaattagac |
209 |
Q |
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| T |
48670501 |
tcaagtgaaaacacagcaacaatgaaagaaggtagagctgaggcatcaatggttatgtttggagcacttgatgaactctttgaaaaaacaggaattagac |
48670600 |
T |
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| Q |
210 |
caaaagatgttggtgttcttgtagtaaattgtagcatattcaatccaacaccatcattgtcagccatgattataaatcattataagatgaggggaaatat |
309 |
Q |
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| T |
48670601 |
caaaagatgttggtgttcttgtagtaaattgtagcatattcaatccaacaccatcattgtcagccatgattataaatcattataagatgaggggaaatat |
48670700 |
T |
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| Q |
310 |
tttgagttataatcttggtggtatgggttgtagtgctggaattattgctgttgatt |
365 |
Q |
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| T |
48670701 |
tttgagttataatcttggtggtatgggttgtagtgctggaattattgctgttgatt |
48670756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 15237164 - 15237261
Alignment:
| Q |
251 |
aatccaacaccatcattgtcagccatgattataaatcattataagatgaggggaaatattttgagttataatcttggtggtatgggttgtagtgctgg |
348 |
Q |
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| T |
15237164 |
aatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtggtatgggttgtagtgctgg |
15237261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 34052056 - 34052096
Alignment:
| Q |
314 |
agttataatcttggtggtatgggttgtagtgctggaattat |
354 |
Q |
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| T |
34052056 |
agttataatcttggtggtatgggttgtagtgctggacttat |
34052096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 10277401 - 10277474
Alignment:
| Q |
284 |
aatcattataagatgaggggaaatattttgagttataatcttggtggtatgggttgtagtgctggaattattgc |
357 |
Q |
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| T |
10277401 |
aatcattataaacttagaggaaatattttgatctataatcttagtggtatgggatgcagtgctggtgttattgc |
10277474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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