View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_77 (Length: 382)
Name: NF9264A_low_77
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 25011584 - 25011955
Alignment:
| Q |
6 |
gaaacatagaacctataccagttttaataatatttcagtgataaattcccttaaaatgatannnnnnncacaaaaagaactaccgataaccaaatattta |
105 |
Q |
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| T |
25011584 |
gaaaaatagaacctatatcatttttaataatatttcagtgataaattcccttaaaatgatattgttttcacaaaaagaactacagataaccaaatattta |
25011683 |
T |
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| Q |
106 |
aagtctaagaatacacattactcgttaacattt-tttggaaacnnnnnnngaacaaatttatttggaaactattgattttgacaattgatatatgtatat |
204 |
Q |
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| T |
25011684 |
a-------gaatacacattactcgttaacatttctttggaaactttttttgaacaaatttatttgaaaactattgattttgacaattgatatatgtatat |
25011776 |
T |
|
| Q |
205 |
aagagcaatgatatttgtacatcttcaatatctttacacg--ttcaacaacttctctattttctctctatatctcttcccatgacttcaccaacatactg |
302 |
Q |
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| T |
25011777 |
aagagcaatgatatttgtacatcttcaatatctttacactcattcaacaacttctctattttctctctatatctcttcccatgacttcaccaacatactg |
25011876 |
T |
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| Q |
303 |
tatctaattctatctctttcatggtgtggtgtagaagaggtatttctatctctctcatggtgttgtgttgaagaggtgt |
381 |
Q |
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| T |
25011877 |
tatctaattccatctctttcatggtgtggtgtagaagaggtatttctatctctctgatggtgttgtgttgaggaggtgt |
25011955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 24986335 - 24986415
Alignment:
| Q |
195 |
atatgtatataagagcaatgatatttgtacatcttcaatatctttaca--cgttcaacaac-ttctctattttctctctat |
272 |
Q |
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| T |
24986335 |
atatatatataagggtaatgatatttgtacatcttcaatatctttacactcattcaacatctttttctattttctctctat |
24986415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 11356533 - 11356639
Alignment:
| Q |
6 |
gaaacatagaacctataccagttttaataatatttcagtgataaattcccttaaaatgatannnnnnncacaaaaagaactaccgataaccaaatattta |
105 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
11356533 |
gaaacatagaacctatatcatttttaataatatttcagtgataaattcccttaaaatgatattgttttcacaaaaagaactacaaataaccaaatattta |
11356632 |
T |
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| Q |
106 |
aagtcta |
112 |
Q |
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| T |
11356633 |
aagtcta |
11356639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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