View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_8 (Length: 496)
Name: NF9264A_low_8
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 14878795 - 14878939
Alignment:
| Q |
112 |
atagcttagtgctctacaattttaaagcctaaaggctcatacaaatacacacgtactcaactttaaacattaagagaattacttgcaagaaaagaattaa |
211 |
Q |
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| T |
14878795 |
atagcttactgctctacaattttaaagcctaaaggctcatacaaatacacacgtactcaactttaaacattaagagaattatttgcaagaaaagaattaa |
14878894 |
T |
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| Q |
212 |
gctattcaagctcaaaacattctcttcatttcaccaatattcttc |
256 |
Q |
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| T |
14878895 |
gctattcaagctcaaaacattctcttcatttcaccaatattcttc |
14878939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 353 - 490
Target Start/End: Original strand, 5251279 - 5251406
Alignment:
| Q |
353 |
ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaagataagtgtataatgcaaacaattttaacaaacgggttcatccatgata |
452 |
Q |
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| T |
5251279 |
ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaa----------taatgcaaacaattttaacaaacaggttcatccatgata |
5251368 |
T |
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| Q |
453 |
attttaaaacaatcgnnnnnnntatacaaaggaatgaa |
490 |
Q |
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| T |
5251369 |
attttaaaacaatcgaaaaaaatatacaaaggaatgaa |
5251406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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