View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264A_low_87 (Length: 371)
Name: NF9264A_low_87
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_87 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 11886399 - 11886040
Alignment:
| Q |
6 |
actgcacctcctgatagtgctgatagtgagagagaattccgcattatgtgcaaaggaactagttcagagggttcatagttatattttcataagagggtac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11886399 |
actgcacctcctgatagtgctgatagtgagagagaattccgcattatgtgcaaaggaactagttcagagggttcatagttatattttcataagagggtac |
11886300 |
T |
|
| Q |
106 |
attcaattattttaatggacacaaagcatgcataagcatttttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacatttctt |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11886299 |
attcaattattttagtggacacaaagcatgcataagcatttttacgctacaaacatatacatagacattgttttaagctacaaacaaatacacatttctt |
11886200 |
T |
|
| Q |
206 |
caatttcttttccctattataagtatacttcgattttttgactatcacattcgtttccttcactataatggacaaatagcttttcactcannnnnnnaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11886199 |
caatttcttttccctattataagtatacttcgattttttgactatcacattcgtttccttcactataatggacaaatagcttttcactcatttttttaat |
11886100 |
T |
|
| Q |
306 |
cgaaggaatatatatactttaaattacaggtgtggtggatgatagtctccgtcactataa |
365 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11886099 |
caaaggaatatatatactttaaattacaggtgtggtggatgatagtctccgtcagtataa |
11886040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University