View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264A_low_99 (Length: 360)
Name: NF9264A_low_99
Description: NF9264A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264A_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 199 - 348
Target Start/End: Complemental strand, 4238284 - 4238135
Alignment:
| Q |
199 |
ttagttgtgaaatcaagcagatttacatgcagcacaaccaaaataaggtttgtgttgcattactcctgcatttactatggtgaattaaagaaaagttttg |
298 |
Q |
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| T |
4238284 |
ttagttgtgaaatcaagcagatttaaatacagcacaaccaaaataaggtttgttttgcattacacctgcatttactatggtgaattaaagaaaagttttg |
4238185 |
T |
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| Q |
299 |
tgtgagctttcatttattttcggtttcatattttacgttattgtaatatt |
348 |
Q |
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| T |
4238184 |
tgtgagctttcatttattttcggtttcatattttacgttgttgtaatatt |
4238135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 4238474 - 4238357
Alignment:
| Q |
5 |
cagctacggcggcacgacttctggtggatatatcttctggtgttacttactgatcttaaatataagacggtggatttggattttctcatgtgggaatttc |
104 |
Q |
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| T |
4238474 |
cagctacggcggcacgacttctggtggatatatcttctggtgttacttactgatcttaaatataagacggtggatttggattttctcatgtgggaatttc |
4238375 |
T |
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| Q |
105 |
acagtgagaggttcatac |
122 |
Q |
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| T |
4238374 |
acagtgagaggttcatac |
4238357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 4252514 - 4252465
Alignment:
| Q |
262 |
tcctgcatttactatggtgaattaaagaaaagttttgtgtgagctttcat |
311 |
Q |
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| T |
4252514 |
tcctgcatctattatgctgaattaaataaaagttttgtgtgaactttcat |
4252465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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