View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_19 (Length: 513)
Name: NF9264_high_19
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_19 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 38725851 - 38726357
Alignment:
| Q |
1 |
ccatggtccaatgttagcggtactaatttcatcgctacggctaataccggcattaaacacccatataggtaatgcaccaagatcctctgctagttggaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725851 |
ccatggtccaatgttagcggtactaatttcatcgctacggctaataccggcattaaacacccatataggtaatgcaccaagatcctctgctagttggaga |
38725950 |
T |
|
| Q |
101 |
ccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccggatctctcttcccttggcccaactgtttctttccacctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725951 |
ccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccggatctctcttcccttggcccaactgtttctttccacctaa |
38726050 |
T |
|
| Q |
201 |
aagcatattttagactgtttccttcaacataagtaccacccaagaaccttaaaaaatttggtttcaaatctgccaccattttaaaaagatcacttcgaaa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38726051 |
aagcatattttagactgtttccttcaacctaagtaccacccaagaaccttaaaaaatttggtttcaaatctgccaccattttaaaaagatcacttcgaaa |
38726150 |
T |
|
| Q |
301 |
accatgacctttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgattt |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38726151 |
accatgaccgttatatgtatccgaaggcatagctgacacttgatctaaccttatcacccctttagtttttgttgttatttgtaaactagaattatgattt |
38726250 |
T |
|
| Q |
401 |
gtacctttagctttaataattctctccatcttactccattttgtaacattaagtccatcagccctaatgctttttgcacccaaatttacaccattatcac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38726251 |
gtacctttagctttaataattctctccatcttactccattttgtaacattaagtccatcagccctaatgctttttgcacccaaatttacaccattaacac |
38726350 |
T |
|
| Q |
501 |
caccaaa |
507 |
Q |
| |
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|| |||| |
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| T |
38726351 |
caacaaa |
38726357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 29596 - 29450
Alignment:
| Q |
311 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
410 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
29596 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
29497 |
T |
|
| Q |
411 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
457 |
Q |
| |
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| T |
29496 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
29450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 457
Target Start/End: Original strand, 34153293 - 34153439
Alignment:
| Q |
311 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
410 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
34153293 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34153392 |
T |
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| Q |
411 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
457 |
Q |
| |
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||| || |||| |||||||| ||||||| ||||||||||||| |||| |
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| T |
34153393 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34153439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 34169274 - 34169128
Alignment:
| Q |
311 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
410 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
34169274 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34169175 |
T |
|
| Q |
411 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
457 |
Q |
| |
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||| || |||| |||||||| ||||||| ||||||||||||| |||| |
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| T |
34169174 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34169128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 34209484 - 34209338
Alignment:
| Q |
311 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
410 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
34209484 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34209385 |
T |
|
| Q |
411 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
457 |
Q |
| |
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||| || |||| |||||||| ||||||| ||||||||||||| |||| |
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| T |
34209384 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34209338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 34430725 - 34430672
Alignment:
| Q |
253 |
aaaatttggtttcaaatctgccaccattttaaaaagatcacttcgaaaaccatg |
306 |
Q |
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|||| |||||||||||||| ||| ||||| || |||||||||||| |||||||| |
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| T |
34430725 |
aaaacttggtttcaaatctaccagcatttgaagaagatcacttcggaaaccatg |
34430672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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