View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_3 (Length: 881)
Name: NF9264_high_3
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_3 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 832; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 18 - 873
Target Start/End: Complemental strand, 437019 - 436164
Alignment:
| Q |
18 |
ttttcctggttacttttcttatcagctatcccagcaaagaaagaacgcgtaccctccagtgactgttccatttcacctcccaacgcaagctcgagacgtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
437019 |
ttttcctggttacttttcttatcagctatcccagcaaagaaaggacgcgtaccctccagtgactgttccatttcacctcccaacgcaagctcgagacgtg |
436920 |
T |
|
| Q |
118 |
gaatcccaacttcaaattggtcaccgctccagtgaggccctttcagtgacatgctatccagcaccaatcgtgagtcatttgtattgtgtgtatcaatagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
436919 |
gaatcccaacttcaaattggtcaccgctccagtgaggccctttcagtgacatgctatccagcaccaatcgtgagtcatttgtattgtgcgtatcaatagg |
436820 |
T |
|
| Q |
218 |
gaagaaggttttttccgtcgttccaaggtcctcgtggatgattttctcatcacaagcttctttgcatcctttgtcttcaactgaatatgcggaaccaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436819 |
gaagaaggttttttccgtcgttccaaggtcctcgtggatgattttctcatcacaagcttctttgcatcctttgtcttcaactgaatatgcggaaccaaaa |
436720 |
T |
|
| Q |
318 |
tcgtttacaagtgatgcagaacttccattcaaagaatccctagctacagaactgtaacatccatagattccactgaaacctgactgcagcttactagaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
436719 |
tcgtttacaagtgatgcagaacttccattcaaagaatccctagctacagaactgtaacatccatagattccactgaaacctgactgcagcttgctagaac |
436620 |
T |
|
| Q |
418 |
tgtctgtatcttccaacttcccatctatcttattccgaggcatttcctgacagccagctgcagaagcgtccataactgtgtcagaatggtctatatgctc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436619 |
tgtctgtatcttccaacttcccatctatcttattccgaggcatttcctgacagccagctgcagaagcgtccataactgtgtcagaatggtctatatgctc |
436520 |
T |
|
| Q |
518 |
aacttttataacattaggtagccgacagctgaccgcttctatggccagatctccctgaaaagttgcttctacattaatattgagaccatcttctctctct |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436519 |
aacttttataacattaggtagccgacagctgaccgcttctatggccagatctccctgaaaagttgcttctacattaatattgagaccatcttctctctct |
436420 |
T |
|
| Q |
618 |
ttccttttaggccttcgatgattttcattattgtttgttctctctgaaattttatctttcctggtgctgtttgcagtgagtacctcttgattgtcaacat |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436419 |
ttccttttaggccttcgatgattttcattattgtttgttctctctgaaattttatctttcctggtgctgtttgcagtgagtacctcttgattgtcaacat |
436320 |
T |
|
| Q |
718 |
gaggaatccttgaagacacggagttctcttgcttgacagaaataccacaattagcttttgtttccacagtcatagctcttacaattattcccacctcttc |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436319 |
gaggaatccttgaagacacggagttctcttgcttgacagaaataccacaattagcttttgtttccacagtcatagctcttacaattattcccacctcttc |
436220 |
T |
|
| Q |
818 |
cagaggttttgaccctctgtgcagtccatggtctgacaaactacctctctgcttct |
873 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |
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| T |
436219 |
cagaggttttgaccctctgtgcagtccatgctctgacaaactacctttctgtttct |
436164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 1237532 - 1237437
Alignment:
| Q |
207 |
gtatcaatagggaagaaggttttttccgtcgttccaaggtcctcgtggatgattttctcatcacaagcttctttgcatcctttgtcttcaactgaa |
302 |
Q |
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||||||| ||| ||||||||| ||||| ||||||| | |||||| |||||||||| ||| | ||||||||| |||||||||||| |||||||| |
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| T |
1237532 |
gtatcaacaggaaagaaggttctttccatcgttcccaagtcctcacggatgattttttcaacggaagcttcttcacatcctttgtctccaactgaa |
1237437 |
T |
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