View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_40 (Length: 355)
Name: NF9264_high_40
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 39695423 - 39695097
Alignment:
| Q |
11 |
cacagacatggaaacattatgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctact |
110 |
Q |
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| T |
39695423 |
cacagacatggaaacattatgcacatgtactaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgct |
39695324 |
T |
|
| Q |
111 |
cctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatatta |
210 |
Q |
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| T |
39695323 |
cctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatatca |
39695224 |
T |
|
| Q |
211 |
agacaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaaccaagctactttggattgc |
310 |
Q |
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| T |
39695223 |
agactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaaccaagcaactttggattgc |
39695124 |
T |
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| Q |
311 |
tattggagttgctaagaatatacttga |
337 |
Q |
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| T |
39695123 |
tattggagttgctaagaatatacttga |
39695097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 39934694 - 39935018
Alignment:
| Q |
15 |
gacatggaaacattat--gcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcc |
112 |
Q |
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| T |
39934694 |
gacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcc |
39934793 |
T |
|
| Q |
113 |
tattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaag |
212 |
Q |
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| T |
39934794 |
tattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaag |
39934893 |
T |
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| Q |
213 |
acaataacagaaacagaactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaaccaagctactttggattgcta |
312 |
Q |
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| T |
39934894 |
acaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaaccaagctactttggattgcta |
39934993 |
T |
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| Q |
313 |
ttggagttgctaagaatatacttga |
337 |
Q |
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| T |
39934994 |
ttggagttgataggaatatacttga |
39935018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 337
Target Start/End: Complemental strand, 39704317 - 39704009
Alignment:
| Q |
29 |
atgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcctattcgttggagcggc |
128 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||| || ||| |
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| T |
39704317 |
atgcacatgtaccaatttgagcctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagtggc |
39704218 |
T |
|
| Q |
129 |
ataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaagacaataacagaaacag |
228 |
Q |
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|||||| |||| | |||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||| || |||||||| ||| ||||||||||||| |
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| T |
39704217 |
ataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaaggtgaggaaaatggatgttgatattatgactataacagaaacag |
39704118 |
T |
|
| Q |
229 |
aactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgctaagaa |
328 |
Q |
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||| |||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
39704117 |
aaccagctggaattttgaaatggggtcctaatgagcgatccatggctaaagcttgaagtaccgtcacactactttggattgctattggagttgctaagaa |
39704018 |
T |
|
| Q |
329 |
tatacttga |
337 |
Q |
| |
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||||||||| |
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| T |
39704017 |
tatacttga |
39704009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 39929069 - 39929317
Alignment:
| Q |
40 |
ctaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcctattcgttggagcggcataggcatttt |
139 |
Q |
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|||||||||| ||||| ||||||||||||||||| | ||||| ||||||| ||| ||||||||||||||||||||| | |||||| || |||| ||| |
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| T |
39929069 |
ctaatttgagtctcttcgattcaacaagagcagagaccaccatgccaagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattt |
39929168 |
T |
|
| Q |
140 |
cctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctggg |
239 |
Q |
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||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
39929169 |
tctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaagtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctggg |
39929268 |
T |
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| Q |
240 |
attttaaaatggggtcctaatgaacgatccatgactaaagcttgaagta |
288 |
Q |
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|||| ||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
39929269 |
atttcaaaatggtatcctaaagaacgatccatgactaaagcttgaagta |
39929317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 33 - 291
Target Start/End: Original strand, 38061739 - 38062001
Alignment:
| Q |
33 |
acatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaacacatgtcctactcctattcgttggagcggcatag |
132 |
Q |
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|||||| |||||||||| || |||| ||||||||||| || ||||||| || ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
38061739 |
acatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaatggtcaacacatagcctactcctattcgttggagcggcatag |
38061838 |
T |
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| Q |
133 |
gcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaatgggtgctgatattaagac---aataacagaaacag |
228 |
Q |
| |
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| T |
38061839 |
gcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacag |
38061938 |
T |
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| Q |
229 |
aactagctgggattttaaaatggggtcctaatgaacgatccatgactaaagcttgaagtacaa |
291 |
Q |
| |
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||| |||||||||||||||||| | ||||| ||||||||||||| |||| |||||||||||| |
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| T |
38061939 |
aaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtacaa |
38062001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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