View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264_high_43 (Length: 346)
Name: NF9264_high_43
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 2466930 - 2466642
Alignment:
| Q |
23 |
acattattttattatactccaataatacgagaaatgtcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2466930 |
acattattttattatactccaataatatgagaaatatcatatgataactataaatataatgagtcaggaactcattacgtacgtacgtttaccctgccat |
2466831 |
T |
|
| Q |
123 |
ttatttatttatttatccatcatatggtatggtttctatatatagcttaaattgaaacattctattaagcatgcacttagtatggcttttcaccaacata |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
2466830 |
ttatttatttatttatccatcatatggtatggtttcta--tatagcttaaagtgaaa----------------cacttagtatggcttttcaccaa---a |
2466752 |
T |
|
| Q |
223 |
gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2466751 |
gttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacc |
2466652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 76 - 332
Target Start/End: Complemental strand, 2462832 - 2462594
Alignment:
| Q |
76 |
atataatgagtcaggaactcattacgtacgtacgtttaccctgccatttatttatttatttatccatcatatggtatggtttctatatatagcttaaatt |
175 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
2462832 |
atataatgagtcaagaactcattacgtacatacgtttaccctgcaatttatttatttatttatccatcatatggtatggtttctatata--gcttaaagt |
2462735 |
T |
|
| Q |
176 |
gaaacattctattaagcatgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac |
275 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2462734 |
gaaaca----------------cttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcac |
2462651 |
T |
|
| Q |
276 |
atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2462650 |
atctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataat |
2462594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 3063274 - 3063403
Alignment:
| Q |
203 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3063274 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
3063373 |
T |
|
| Q |
303 |
gtgagtttctccaaacaacctgagtataat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3063374 |
gtgagtttctccaaacaacctgagtataat |
3063403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 193 - 332
Target Start/End: Complemental strand, 2458154 - 2458018
Alignment:
| Q |
193 |
atgcacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacat |
292 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |||||| |||||||||||| |
|
|
| T |
2458154 |
atgcacttagtatggcttttgaccaacatagttgcctggtggatcgtaattgcaaataatgaatgtgcctccattatt---acatcttactttggcacat |
2458058 |
T |
|
| Q |
293 |
ccaacacgttgtgagtttctccaaacaacctgagtataat |
332 |
Q |
| |
|
|||| ||| | || ||||||||||||||||||||| |||| |
|
|
| T |
2458057 |
ccaatacgctttgtgtttctccaaacaacctgagtgtaat |
2458018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 327
Target Start/End: Complemental strand, 2470100 - 2469972
Alignment:
| Q |
196 |
cacttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatcca |
295 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
2470100 |
cacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttatt---acatttcactttggcacatcca |
2470004 |
T |
|
| Q |
296 |
acacgttgtgagtttctccaaacaacctgagt |
327 |
Q |
| |
|
| ||||||| |||||||||||| |||||||| |
|
|
| T |
2470003 |
atccgttgtgtgtttctccaaaccacctgagt |
2469972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 2474368 - 2474238
Alignment:
| Q |
199 |
ttagtatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaaca |
298 |
Q |
| |
|
||||||||| |||| |||| ||||||||| || |||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||| | |
|
|
| T |
2474368 |
ttagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattat---cacatttcactttggcacatccaata |
2474272 |
T |
|
| Q |
299 |
cgttgtgagtttctccaaacaacctgagtataat |
332 |
Q |
| |
|
|||| || |||||||||||| ||||||||||||| |
|
|
| T |
2474271 |
cgttttgtgtttctccaaaccacctgagtataat |
2474238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 2471090 - 2471017
Alignment:
| Q |
230 |
ggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgttgtga |
306 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
2471090 |
ggtgggtcataattgcaagtaatgaatgtgcctccattat---cacatctcactttgccacatccaacacgttgtga |
2471017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 2486576 - 2486512
Alignment:
| Q |
268 |
attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataat |
332 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
2486576 |
attatcacatttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataat |
2486512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 18016046 - 18015917
Alignment:
| Q |
203 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18016046 |
tatggcttttcaccaacatagttgcctggtgggtcgtaattgcatgtaatgaatgttcctctattattatcacatctcactttggcacatccaacacgtt |
18015947 |
T |
|
| Q |
303 |
gtgagtttctccaaacaacctgagtataat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18015946 |
gtgagtttctccaaacaacctgagtataat |
18015917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University