View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_45 (Length: 342)
Name: NF9264_high_45
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_45 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 326
Target Start/End: Complemental strand, 44840224 - 44839904
Alignment:
| Q |
6 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaaactcttca |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44840224 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaaactcttca |
44840125 |
T |
|
| Q |
106 |
aagattcttctactgcctgtaacaatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagctacagagaaagttgttcaaattgca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44840124 |
aagattcttctactgcctgtaacaatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagctacagagaaagttgttcaaattgca |
44840025 |
T |
|
| Q |
206 |
tctaaactgaaatcatcttttatacagccatcttttactgatccatacccttaacataaaaataagcaattaaaagtgcttgagaaacatgttaaagagc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44840024 |
tctaaactgaaatcatcttttatacagccatcttttactgatccatacccttaacataaaaataagcaattaaaagtgcttgagaaacatgttaaagagc |
44839925 |
T |
|
| Q |
306 |
gtaaaatttactgtaatactt |
326 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
44839924 |
gtaaaatttactgtaatactt |
44839904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 44900624 - 44900401
Alignment:
| Q |
6 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaaactcttca |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||| ||| |||||| |
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| T |
44900624 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttcctgcttgcttatcagcaacacctccatggaaaaggtttaaattcttca |
44900525 |
T |
|
| Q |
106 |
aagattcttctactgcctgtaacaatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagctacagagaaagttgttcaaattgca |
205 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||||| || |||||| |||| |||| || | | | |||| |||||||| |||||||| |
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| T |
44900524 |
aagattcttctactgcctgcaacaataaaatggaagctaaatagttacaattttccctttcaagcaaatgccatcaaaagaggaagttgtttaaattgca |
44900425 |
T |
|
| Q |
206 |
tctaaactgaaatcatcttttata |
229 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
44900424 |
tctaaactgcaatcatcttttata |
44900401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 44866043 - 44865822
Alignment:
| Q |
6 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaaactcttca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||| |||||| |
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| T |
44866043 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagcaacccctccatggaaaaggtttaaattcttca |
44865944 |
T |
|
| Q |
106 |
aagattcttctactgcctgtaacaatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagctacagagaaagttgttcaaattgca |
205 |
Q |
| |
|
|||||||||||||||||||||||| || |||| | |||||||||||| | || ||| ||||||||| | ||||| |||| |||||||||||| | || |
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| T |
44865943 |
aagattcttctactgcctgtaacagtagaatgcaagctaaatagttacgattttacctttcaaacaaatggcagctaaagaggaagttgttcaaaataca |
44865844 |
T |
|
| Q |
206 |
tctaaactgaaatcatctttta |
227 |
Q |
| |
|
||| ||||| ||| |||||||| |
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| T |
44865843 |
tcttaactgcaattatctttta |
44865822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 44851711 - 44851565
Alignment:
| Q |
6 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaaactcttca |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||| |||||||||| |
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|
| T |
44851711 |
atcaatgaaattgcaacactaagtctcctcttcatccctccactgtattttccacattgtttatcagcaacccctccatagaaaaggtttaaactcttca |
44851612 |
T |
|
| Q |
106 |
aagattcttctactgcctgtaacaatataatggatgctaaatagtta |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
44851611 |
aagattcttctactgcctgtaacaatataatggtagctaaatagtta |
44851565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 44883908 - 44883782
Alignment:
| Q |
6 |
atcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaaactcttca |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| ||| ||||| |
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| T |
44883908 |
atcaatgaaatggcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaacccctccatagaaaaggtttaaaaccttca |
44883809 |
T |
|
| Q |
106 |
aagattcttctactgcctgtaacaata |
132 |
Q |
| |
|
||||||||||||||||||| ||||||| |
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|
| T |
44883808 |
aagattcttctactgcctgcaacaata |
44883782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 12924833 - 12924953
Alignment:
| Q |
4 |
cgatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctccatggtaaaggttcaaactctt |
103 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||| |||||| || ||||||| | ||| || |
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| T |
12924833 |
cgattaatgaaattgcaacactaagcctcctcttcattcctccactatattttccagcctttttatcagcaacccctccgtgaaaaaggtttacactttt |
12924932 |
T |
|
| Q |
104 |
caaagattcttctactgcctg |
124 |
Q |
| |
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|||||||||||| || ||||| |
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| T |
12924933 |
caaagattcttccaccgcctg |
12924953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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