View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_58 (Length: 277)
Name: NF9264_high_58
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_58 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 22370924 - 22371095
Alignment:
| Q |
12 |
tggtgttgaagtttggccatgaaaaagatgggaaccgtactggttgccgttgcaatcctttagtgcaaatgctctagccaatgcaaggatgtcagcaccg |
111 |
Q |
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| T |
22370924 |
tggtgttgaagtttggccatgaaaaagatgggaaccgtactggttgccgttgcaatcctttagtgcaaatgctctagccaatgcaaggatgtcagcaccg |
22371023 |
T |
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| Q |
112 |
tcacgtagtcgccacattgtcgttccaaccaccttttagtatcaagagccaattcacagtaattgaacgtca |
183 |
Q |
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| T |
22371024 |
tcacgtagtcgccacattgtcgttccaaccaccttttagtatcaagagccaattcacagtaattgaacgtca |
22371095 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 22371155 - 22371219
Alignment:
| Q |
187 |
agaaggtgcctcaaactgtgccatacagtactcctgttcgttttttaagtttttgccatggttgg |
251 |
Q |
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| T |
22371155 |
agaaggtgcctcaaactgtgccatacagtactcctgttcgttttttaagtttctgccatggttgg |
22371219 |
T |
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