View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_65 (Length: 262)
Name: NF9264_high_65
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_65 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 34754989 - 34755241
Alignment:
| Q |
10 |
gcagagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaattgcatgtttacttcatagtacatacacataactta |
109 |
Q |
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| T |
34754989 |
gcagagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaattgcatgtttacttcatagtacatacacataactta |
34755088 |
T |
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| Q |
110 |
ccaaaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcctcaataaatacttaacactattgattgatgaaattt |
209 |
Q |
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| T |
34755089 |
ccaaaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcctcaataaatacttaacactattgatcgatgaaattt |
34755188 |
T |
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| Q |
210 |
aaattaattagcatataattagaagataagaaacaaagacaattagaataaac |
262 |
Q |
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| T |
34755189 |
aaattaattagcatataattagaagataagaaacaaagacaattagaataaac |
34755241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 34780977 - 34780895
Alignment:
| Q |
180 |
aatacttaacactattgattgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaac |
262 |
Q |
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| T |
34780977 |
aatacttaacaccgttgattaatggaatttaaattaattagaatgtatttataagataagaaacaaagacaatcagaagaaac |
34780895 |
T |
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