View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_73 (Length: 235)
Name: NF9264_high_73
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_73 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14163644 - 14163424
Alignment:
| Q |
1 |
cccaatactaatagtttatgtagtagcaattattatttttacattatagttttgacttttgatacgcatccttattacacatgcataatactaataatag |
100 |
Q |
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| T |
14163644 |
cccaatactaatagtttatgtagtagcaattattatttttacattatagttttgacttttgatacgcatccttattacacatgcataatactaataatag |
14163545 |
T |
|
| Q |
101 |
tcatatagatcggaatctattttaagggaggatgaaataataggaaaatgttaaactaatcgccttgcatttttatttatatnnnnnnnnnntatctcca |
200 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
14163544 |
tcatatagatcggaatctgttttaagggagggtgaaataataggaaaatgttaaactaatcaccttgcatttttatttatat--aaaaaaaatatctcca |
14163447 |
T |
|
| Q |
201 |
tgaggggttaatattgtgttcat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14163446 |
tgaggggttaatattgtgttcat |
14163424 |
T |
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