View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_80 (Length: 205)
Name: NF9264_high_80
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 278018 - 278193
Alignment:
| Q |
19 |
tatttctcaagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttacttggtaactcctcattctcacaacatttc |
118 |
Q |
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| T |
278018 |
tatttctcaagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttacttggtaactcctcattctcacaacatttc |
278117 |
T |
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| Q |
119 |
tatcaaaattccaatttcggaactgaaactacattttggccaccatatgattccacaatagttactgcacaggttc |
194 |
Q |
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| T |
278118 |
tatcaaaattccaatttcggaactgaaactacattttggccaccatatgattccacaatagttactgcacaagttc |
278193 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 48142249 - 48142185
Alignment:
| Q |
27 |
aagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttactt |
91 |
Q |
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| T |
48142249 |
aagaatggagttctcttagtggattttacacagctgaggaagctgattttatgggccagttactt |
48142185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 48147041 - 48146974
Alignment:
| Q |
20 |
atttctcaagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagtt |
87 |
Q |
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| T |
48147041 |
atttctgaagaatgggattctcttagtggacagtacacagctgaggaagctgacttcatgaatcagtt |
48146974 |
T |
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