View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_high_9 (Length: 613)
Name: NF9264_high_9
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 14 - 609
Target Start/End: Complemental strand, 4353252 - 4352660
Alignment:
| Q |
14 |
attaccaacttggtatggtaagtaacaccataatatccattataaagctaatggacaaaatattt---tagtgaaagtatatattttcatcctactaatt |
110 |
Q |
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||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4353252 |
attaccaacttggtatggtaa----cacaataagatccattataaagttaatggacaaaatatttaagtagtgaaagtatatattttcatcctactaatt |
4353157 |
T |
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| Q |
111 |
ggagtaagagtaggccacacaacaatcacttgcgtgtttcagccatttcagccttcttctgctctttggctgaaacatatttatttaacaatcagtttca |
210 |
Q |
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| T |
4353156 |
ggagtaagattaggccacacaacattcacttgcgtgtttcagccatttcagccttcttctgctctttggctgaaacatatttatttaaaaatcagtttca |
4353057 |
T |
|
| Q |
211 |
tgcttttgaatgtctgaatagaacaagcagaacaaacagtattttagacttaccagctttctcttcatttcgctttttagcagcttctgccctttgctga |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4353056 |
tgcttttgaatgtctgaatagaacaagcagcacaaacagtattttagacttaccagctttctcttcatttcgctttctagcagcttctgccctttgctga |
4352957 |
T |
|
| Q |
311 |
cgtataagagctaatcgttctgcacaacatcaacaaagaaattaaacattaataattgaaggaaaacttttccaagcaaagcatgttaattttggtttaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4352956 |
cgtataagagctaatcgttctgcacaacatcaacaaagaaattaaacattaataattgaaggaaaacttttccaagcaaagcatgttaattttggtttaa |
4352857 |
T |
|
| Q |
411 |
ctcatgcagcttatgctttgtgccattcaatcaatagtttatgtatgtgataatgtcaaacgtacgggnnnnnnnnnnnnnnnnnngatgtagaagaagc |
510 |
Q |
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| T |
4352856 |
ctcatgcagcttatgctttgtgccattcaatcaatagtttatgtatgtgataatgtcaaacgtacggg--aaaaaataaataaaaagatgtagaagaagc |
4352759 |
T |
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| Q |
511 |
aaattaaaacagacaattagtacctaaatctttctttgattgatctgtttttccttgctcttgaagcctcatatagcgttcatgagctctctgcttctc |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4352758 |
aaattaaaacagacaattagtacctaaatctttctttgattgatctgtttttccttgctcttgaagcctcatatagcgttcatgagctctctgtttctc |
4352660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 528 - 609
Target Start/End: Original strand, 34713709 - 34713790
Alignment:
| Q |
528 |
tagtacctaaatctttctttgattgatctgtttttccttgctcttgaagcctcatatagcgttcatgagctctctgcttctc |
609 |
Q |
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| T |
34713709 |
tagtacctaaatctttcctggattgttctgtttttccttgctcttgaagtttcatgtagcgctcatgagctctctgtttctc |
34713790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 34713536 - 34713599
Alignment:
| Q |
261 |
taccagctttctcttcatttcgctttttagcagcttctgccctttgctgacgtataagagctaa |
324 |
Q |
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|||| ||||||||||| | |||||||||||||||||| || |||| ||||| ||||||||||| |
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| T |
34713536 |
tacccgctttctcttcttctcgctttttagcagcttcagctctttcttgacggataagagctaa |
34713599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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