View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264_low_1 (Length: 1367)
Name: NF9264_low_1
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 896; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 21 - 1001
Target Start/End: Complemental strand, 28829939 - 28828975
Alignment:
| Q |
21 |
acagatttatagtttcttctttgggccgatggaagtcttccatcggcctgcatcctaaccattgccacatcagccggattcccgacagccgcgccaatcc |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28829939 |
acagatttatagtttcttctttgggccgatggaagtcttccatcggcctgcatcctaaccattgccacatcagccggattcccgacagccgcgccaatcc |
28829840 |
T |
|
| Q |
121 |
caccggctagcagccccgctccaatcttgcttgtcaacggcaaagtaccagagataggatcagaccattttttcttcatcatatcatagagtcccatacg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28829839 |
caccggctagcagccccgctccaatcttgcttgtcaacggcaaagtaccggagataggatcagaccattttttcttcatcatatcatagagtcccatacg |
28829740 |
T |
|
| Q |
221 |
agtggtggaatagagacactgccggagaacggtggcagagacaccggagaaaagtgctgctacaccttcttgctggactagcttaacaccaacggcgatc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28829739 |
agtggtggaatagagacactgccggagaacggtggcagagacaccggagaaaagtgctgctacaccttcttgttggactagcttaacaccaacggcgatc |
28829640 |
T |
|
| Q |
321 |
ggcccaacacggggcggttgggccgtcaccgccggtgaccgatgaaccgaaccgggttggaaagctaatgctggtcggatattggttgtaggagcattct |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28829639 |
ggcccaacacggggcggttgggccgtcaccgctggtgaccgatgaaccgaaccgggttggaaagctaatgctggtcggatattggttgtaggagcattct |
28829540 |
T |
|
| Q |
421 |
ctccttgaagctgcattcgaaccttgatgagatcaagagggtgtgttgaacaccctgcaatgatggaagctatgcctccttcgacgaaacctttcacacc |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28829539 |
ctccttgaagctgcattcgaaccttgatgagatcaagagggtgtgttgaacaccctgcaatgatggaagctatgcctccttcgacgaaacctttcacacc |
28829440 |
T |
|
| Q |
521 |
cattgagattaattggcacaaaaagtttgtgacaactttgaaagaatcaaatgaataagaaagaaaagggttgtgttgattttgtcaatagaatttttgg |
620 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28829439 |
cattgcgattaattggcacaaaaagtttgcgacaac----------------gaataagaaagaaaagggttgtgttgattttgtcaatagaatttttgg |
28829356 |
T |
|
| Q |
621 |
gaaatattttctatgagatttgtttatgtaacgaaataaacggatctcaaattatgggaaggtggtaagagaggactaattgaagtttaggttgggaatg |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28829355 |
gaaatattttctatgagatttgtttatgtaacgaaataaacggatctcaaattatgggaaggtggtaagagaggactaattgaagtttaggttgggaatg |
28829256 |
T |
|
| Q |
721 |
aatatcaaaagttactatgaaacaagattgaggaacgtaaaaggtttgagacatgtgacaaaagaagaaaccgtgtgtgaaaacgaaaacgaggtttgtg |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28829255 |
aatatcaaaagttactatgaaacaagattgaggaacgtaaaaggtttgagacatgtgacaaaagaagaaaccatgtgtgaaaacgaaaacgaggtttgtg |
28829156 |
T |
|
| Q |
821 |
ttggggagttatattgggaaatagaggaatttatagcaagtgtgtttggaagggaaaagaatgattgtggaagctggcactgtcatgaggtaacaaatta |
920 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28829155 |
ttgtgaagttatattgggaaatagaggaatttatagcaagtgtgtttggaagggaaaagaatgattgtggaagctggcactgtcatgaggtaacaaatta |
28829056 |
T |
|
| Q |
921 |
gaagaaaaatagaaaaatatctttgtcaaatcttcgccaaattattaattattaaacgcgttgtatggtgggggccttcct |
1001 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28829055 |
gaagaaaaatagaaaaatatctttgtcaaatcttcgccaaattattaattattaaacgcgttgtatggtgggggccttcct |
28828975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1058 - 1353
Target Start/End: Complemental strand, 28828918 - 28828637
Alignment:
| Q |
1058 |
aatagtattggaaagatctttaaaaatcagaaaatcacattggtctagttggattgtcaaactttttcctacaaaaactcattgtcctcgtaattgttgg |
1157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28828918 |
aatagtattggaaagatctttaaaaatcagaaaatcacattggtctagttggattgtcaaactttttcctacaaaaactcattgtcctcgtaattgttgg |
28828819 |
T |
|
| Q |
1158 |
taagttgttcatcggactgttgttggatgcatattattttcattgttgcaatattcattgttggagattaacataatcaaaatcacatacttctcaaaaa |
1257 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28828818 |
gaagttgttcatcggactgttgttggacgcatattttt---------------ttcatttttggagattaacataatcaaaatcacatacttttcaaaaa |
28828734 |
T |
|
| Q |
1258 |
gatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcattttttaaaattttactat-caaaaaagttgtagctg |
1353 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28828733 |
gatatctctcaaaattaatttttacgagaagtcattcaaaatatcttctcattttaagcattttttaaaattttactatccaaaaaagttgtagctg |
28828637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1225 - 1343
Target Start/End: Complemental strand, 39888727 - 39888609
Alignment:
| Q |
1225 |
ttaacataatcaaaatcacatacttct--caaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcattttt |
1322 |
Q |
| |
|
|||||||||| ||||||||||| || | ||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||| |||| ||||| |
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|
| T |
39888727 |
ttaacataataaaaatcacatatttttttcaaaaagatatctctcaaa--taatttttaccagaagttattcaaaatatcttttcatttaaagcgttttt |
39888630 |
T |
|
| Q |
1323 |
taaaattttactatcaaaaaa |
1343 |
Q |
| |
|
|||| |||| |||| ||||| |
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|
| T |
39888629 |
aaaaactttattatccaaaaa |
39888609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1253 - 1323
Target Start/End: Complemental strand, 30389593 - 30389523
Alignment:
| Q |
1253 |
aaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcatttttt |
1323 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
30389593 |
aaaaagatatctcttgaaaatggtttttatgagaagctattgaaaatagcttctcattttaagcatttttt |
30389523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1208 - 1343
Target Start/End: Complemental strand, 28769905 - 28769769
Alignment:
| Q |
1208 |
atattcattgttggagatt-aacataatcaaaatcacatacttctcaaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttct |
1306 |
Q |
| |
|
|||||||||||| |||||| || || || ||| ||||||| | |||||||||||| | ||||||| ||||||| ||||| ||| |||||| ||| | |
|
|
| T |
28769905 |
atattcattgtttgagatttaaaattataaaactcacatatatttcaaaaagatatatgtcaaaaaagatttttaagagaaactatttaaaatagcttat |
28769806 |
T |
|
| Q |
1307 |
cattttaagcattttttaaaattttactatcaaaaaa |
1343 |
Q |
| |
|
||| |||||||||||||||||||||| |||| ||||| |
|
|
| T |
28769805 |
catgttaagcattttttaaaattttattatccaaaaa |
28769769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1248 - 1323
Target Start/End: Original strand, 19227391 - 19227466
Alignment:
| Q |
1248 |
ttctcaaaaagatatctctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcatttttt |
1323 |
Q |
| |
|
||||| ||||||||| || |||||| |||||||||| ||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
19227391 |
ttctcgaaaagatataacttaaaaatgatttttacgaaaagcttttcaaaatagcttctcattttaagcatttttt |
19227466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1291 - 1332
Target Start/End: Complemental strand, 30353171 - 30353130
Alignment:
| Q |
1291 |
attcaaaatatcttctcattttaagcattttttaaaatttta |
1332 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
30353171 |
attcaaaatagcttctcattttaagcattttttgaaatttta |
30353130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1264 - 1343
Target Start/End: Original strand, 39499393 - 39499472
Alignment:
| Q |
1264 |
tctcaaaaataatttttacgagaagtaattcaaaatatcttctcattttaagcattttttaaaattttactatcaaaaaa |
1343 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||| ||| |||||||||||| | |||||| |||||||| |||| ||||| |
|
|
| T |
39499393 |
tctcaaaaataatttttatgagaaactattgaaactattttctcattttaatctttttttgaaattttagtatccaaaaa |
39499472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1302 - 1332
Target Start/End: Original strand, 23736603 - 23736633
Alignment:
| Q |
1302 |
cttctcattttaagcattttttaaaatttta |
1332 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23736603 |
cttctcattttaagcattttttaaaatttta |
23736633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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