View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_102 (Length: 326)
Name: NF9264_low_102
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_102 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 6577278 - 6577587
Alignment:
| Q |
14 |
agatagttccatgtatttggaaagtaaagtgtacttcgatggagtgcatgaagcatataatatgaaattgtatgcatatgcatgagtgggttttggatta |
113 |
Q |
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| T |
6577278 |
agatagttccatgtatttggaaagtaaagtgtacttcgatggagtgcatgaagcatataatatgaaattgtatgcatatgcatgagtgggttttggatta |
6577377 |
T |
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| Q |
114 |
aatacaccctatcaaaggttgnnnnnnnnnngtcacggatgaattttgatttacgtcattatcaatgaatcccatgtctacacacacaacaaaaactata |
213 |
Q |
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| T |
6577378 |
aatacaccctatcaaaggttgttttttttttgtcacggatgaattttgatttacgtcattatcaatgaatcccatgtctacacacacaacaaaaactata |
6577477 |
T |
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| Q |
214 |
tatgaatgcatgtagaaacatattattcaactttcaagcacctaaaggagtagaaaagatacgatcaacttcagtttcgaacataaacggtgttgggcct |
313 |
Q |
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| T |
6577478 |
tatgaatgcatgtagaaaca---tattcaactttcaagcacctaaaggagtagaaaagatacgatcaacttcagtttcaaacataaacggtgttgggcct |
6577574 |
T |
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| Q |
314 |
ttaattgaattat |
326 |
Q |
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| T |
6577575 |
ttaattgaattat |
6577587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 34243927 - 34243864
Alignment:
| Q |
249 |
aagcacctaaaggagtagaaaagatacgatcaacttcagtttcgaacataaacggtgttgggcc |
312 |
Q |
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| T |
34243927 |
aagcacctaatggcgtagaaaagatacgatcaacttcagtttcaaacataaatggtgtcgggcc |
34243864 |
T |
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