View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264_low_105 (Length: 306)
Name: NF9264_low_105
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_105 |
 | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0741 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0065 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 41914 - 42201
Alignment:
| Q |
3 |
aggaattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41914 |
aggaattccgtcacctgtgataattcatacttctcatagtcctgttattcagaataataattttagtatgcagcttgagaatgtttccgatgatatagtt |
42013 |
T |
|
| Q |
103 |
gcaaat---cttgagggaaatactatatctaatttatctgccgtaaaaaataaaactcttgatatcagtagtattgtggttctgaagggttctaagatag |
199 |
Q |
| |
|
|| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||| |
|
|
| T |
42014 |
gctaataatcttgagggaaatactatatcttttttatctcccgtaaaaaataaaactcttgacatcagtagtattgtggctccggagggttctaagatag |
42113 |
T |
|
| Q |
200 |
atccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
42114 |
atccggtgctacaaaaagacttagattttatgcacacttggctatcaaaggcagcaacaaccgaggtaccatttacaaatgttgtttc |
42201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 37635190 - 37634906
Alignment:
| Q |
3 |
aggaattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | || ||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37635190 |
aggaatttcgtcacctgtggtaactcatacttct---agtcatgttatttaaaataataattttagtatgcagcttgagaatgtttccgatgatatagtt |
37635094 |
T |
|
| Q |
103 |
gcaaat---cttgagggaaatactatatctaatttatctgccgtaaaaaataaaactcttgatatcagtagtattgtggttctgaagggttctaagatag |
199 |
Q |
| |
|
|| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
37635093 |
gctaataatcttgagggaaatactatatctgttttatctcccgtaaaaaataaaactcttgatatcagtagtattgtggctcccgagggttctaagatag |
37634994 |
T |
|
| Q |
200 |
atccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
37634993 |
atccggtgctacaaaaagacttggattttatgcacacttggctatcaaaggcagcagctaccgaggtaccatttacacaggttgtttc |
37634906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 21345846 - 21345766
Alignment:
| Q |
20 |
tggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatag |
100 |
Q |
| |
|
|||||||||||| |||||||| |||| |||| |||||||||||||| || || ||||||||||| || ||||| |||| |
|
|
| T |
21345846 |
tggtaactcatatttctcatagccctgctattactaataatacttttagcattcaacttgagaatgtatctgatgagatag |
21345766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 20304462 - 20304178
Alignment:
| Q |
3 |
aggaattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20304462 |
aggaattccgtcacctgtggtaactcatacttct---agtcctgttattcagaataataattttagtatgcagcttgagaatgtttccgatgatatagtt |
20304366 |
T |
|
| Q |
103 |
gcaaat---cttgagggaaatactatatctaatttatctgccgtaaaaaataaaactcttgatatcagtagtattgtggttctgaagggttctaagatag |
199 |
Q |
| |
|
|| ||| | ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
20304365 |
gctaataatcctgagggaaatactatatatgttttatctcccgtaaaaaataaaactcttgatatcagtagtattgtggctcccgagggttctaagatag |
20304266 |
T |
|
| Q |
200 |
atccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| | |||||||| |
|
|
| T |
20304265 |
atctggtgctacaaaaagacttagattttatgcacacttggctatcaaagccagcagctaccgaggtaccatttacacaagttgtttc |
20304178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 2290014 - 2289727
Alignment:
| Q |
3 |
aggaattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
2290014 |
aggaattccatcacttgtggtaactcatttttctcatagtcctgttattcagaatcataattttagcatgcagcttgagaatgttttcgatgatatagtt |
2289915 |
T |
|
| Q |
103 |
gca---aatcttgagggaaatactatatctaatttatctgccgtaaaaaataaaactcttgatatcagtagtattgtggttctgaagggttctaagatag |
199 |
Q |
| |
|
||| ||||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
2289914 |
gcacataatctggatggaaatactatatctgttttatctctcgtaaaaaataaaactcttgatatcagtagtattgtggctccagatggttctaagatag |
2289815 |
T |
|
| Q |
200 |
atccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2289814 |
atccggtgctacaaaaagacttagattttatgaacacttggctatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
2289727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 15408904 - 15409037
Alignment:
| Q |
154 |
actcttgatatcagtagtattgtggttctgaagggttctaagatagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcag |
253 |
Q |
| |
|
||||||||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
15408904 |
actcttgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcag |
15409003 |
T |
|
| Q |
254 |
cagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
15409004 |
cagcaaccgaggtaccatttatagaggttgtttc |
15409037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0741 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 6001 - 6287
Alignment:
| Q |
3 |
aggaattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6001 |
aggaatttcgtcacctgtggtaactcatacttct---agtcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
6097 |
T |
|
| Q |
103 |
gc----aaatcttgagggaaatactatatctaatttatctgccg-taaaaaataaaactcttgatatcagtagtattgtggttctgaagggttctaagat |
197 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
6098 |
gctaataaatcttgagggaaatactatatctgttttatctccccataaaaaataaaactcttgatatcaatagtattgtggctcccgagggttctaagat |
6197 |
T |
|
| Q |
198 |
agatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
6198 |
agattcggtgctacaaaaagacttggattttatgcacacttggctatcaaaggcagcagctaccgaggtaccatttacacaggttgtttc |
6287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 26177143 - 26177406
Alignment:
| Q |
3 |
aggaattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| || ||| |
|
|
| T |
26177143 |
aggaattccgtcacctgtggtaactcatacttct---agtcctgttattcagaataataattttagtatgcagcttgagg-----------gaaata--- |
26177225 |
T |
|
| Q |
103 |
gcaaatcttgagggaaatactatatctaatttatctgccgtaaaaaataaaactcttgatatcagtagtattgtggttctgaagggttctaagatagatc |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||| |
|
|
| T |
26177226 |
----atcttgagggaaatactatatctgttttatctcccgtaaaaaataaaactcttgatatcagtagtattgtggctccggaggattctaagatagatc |
26177321 |
T |
|
| Q |
203 |
cggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26177322 |
cggtgcaacaaaaagacttagattttatgcacacttggctatcaaaggcagcaacaaccgaggtaccatttacacaggttgtttc |
26177406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 19159943 - 19160076
Alignment:
| Q |
154 |
actcttgatatcagtagtattgtggttctgaagggttctaagatagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcag |
253 |
Q |
| |
|
|||| |||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
19159943 |
actcatgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcag |
19160042 |
T |
|
| Q |
254 |
cagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
19160043 |
cagcaaccgaggtaccatttatagaggttgtttc |
19160076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 20759342 - 20759475
Alignment:
| Q |
154 |
actcttgatatcagtagtattgtggttctgaagggttctaagatagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcag |
253 |
Q |
| |
|
|||| |||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
20759342 |
actcatgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcag |
20759441 |
T |
|
| Q |
254 |
cagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
20759442 |
cagcaaccgaggtaccatttatagaggttgtttc |
20759475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 7811328 - 7811285
Alignment:
| Q |
197 |
tagatccggtgctacaaaaagacttagattttatgcacacttgg |
240 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
7811328 |
tagatccggtgctgcaaaaagacttagattttatgcaaacttgg |
7811285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 7811485 - 7811420
Alignment:
| Q |
43 |
cctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagttgcaaat |
108 |
Q |
| |
|
|||||||| || |||||||||||||| |||| |||||||||||||| ||||| |||||| ||||| |
|
|
| T |
7811485 |
cctgttatacataataatacttttagcttgcaacttgagaatgtttctgatgagatagttacaaat |
7811420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 25820096 - 25820380
Alignment:
| Q |
3 |
aggaattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| |||||||||||| ||| | |||||||||||||| |||||||| ||||| || |||||| || |
|
|
| T |
25820096 |
aggaattccgtcacctatggtaactcactcttctcatcgtcctgttattcataatcacacttttagtatgcatcttgagaaagtttcagacgatataatt |
25820195 |
T |
|
| Q |
103 |
gcaaatc---ttgagggaaatactatatctaatttatctgccgtaaaaaataaaactcttgatatcagtagtattgtggttctgaagggttctaagatag |
199 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||| | || |||||||||||||||||||||||||| ||||||| | | |||||||| ||| || |
|
|
| T |
25820196 |
gcaaataatattgagggaaacactatcgttgttttatctcctgtgaaaaataaaactcttgatatcagtagcattgtggcttcggagggttctcagacag |
25820295 |
T |
|
| Q |
200 |
atccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgt |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||| ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25820296 |
atccggtgctacaaaaagacttggattttatgcgcaattggctatctaaagcagcagcaaccgaggtaccatttacagaggttgt |
25820380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 25823072 - 25823205
Alignment:
| Q |
154 |
actcttgatatcagtagtattgtggttctgaagggttctaagatagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcag |
253 |
Q |
| |
|
||||||||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
25823072 |
actcttgatatcagtagcattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggcag |
25823171 |
T |
|
| Q |
254 |
cagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
25823172 |
cagcaaccgaggtaccatttatagaggttgtttc |
25823205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 154 - 288
Target Start/End: Original strand, 16170767 - 16170901
Alignment:
| Q |
154 |
actcttgatatcagtagtattgtggttctgaagggttctaagatagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcag |
253 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
16170767 |
actcctgatatcagtagtattgtggctccgaagggttctaagatagatccggtgttacaaaaagacttagatttcatgcacacttggctatcaaaggcag |
16170866 |
T |
|
| Q |
254 |
cagcaaccgaggtaccatttacagaggttgtttct |
288 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
16170867 |
cagcaaccgaggtaccatttatagaggttatttct |
16170901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 21862057 - 21862190
Alignment:
| Q |
154 |
actcttgatatcagtagtattgtggttctgaagggttctaagatagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggcag |
253 |
Q |
| |
|
||||| |||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
21862057 |
actctagatatcagtaacattgtggctccggagggttctaagatagatccggtgctacaaaaagacttagatttcatgcacacttggctatcaaaggtag |
21862156 |
T |
|
| Q |
254 |
cagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||| |
|
|
| T |
21862157 |
gagcatccgaggtaccatttatagagattgtttc |
21862190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 15042331 - 15042420
Alignment:
| Q |
6 |
aattccgtcacctgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatga |
95 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||||| |||||||||| |||||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
15042331 |
aattccgacaccggtggtaactgatacttctcatactcctgttattattaataatacatttacaatgcaacttgagaatgtttccgatga |
15042420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 29807102 - 29807170
Alignment:
| Q |
18 |
tgtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgt |
86 |
Q |
| |
|
||||||||||||||||||||| | || ||||| | | |||||||||||||||||||| ||||||||||| |
|
|
| T |
29807102 |
tgtggtaactcatacttctcacagtcttgttaataataataatacttttagtatgcaacttgagaatgt |
29807170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 29807281 - 29807320
Alignment:
| Q |
194 |
agatagatccggtgctacaaaaagacttagattttatgca |
233 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
29807281 |
agatagatccggtgctacagaaggacttagattttatgca |
29807320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 22834348 - 22834294
Alignment:
| Q |
197 |
tagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggc |
251 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
22834348 |
tagatccggtgctgcagaaggacttagattttatgcaaacttggctagcaaaggc |
22834294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 46137016 - 46137071
Alignment:
| Q |
232 |
cacacttggccatcaaaggcagcagcaaccgaggtaccatttacagaggttgtttc |
287 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
46137016 |
cacacttggctatcaaagacagcagcaaccgaggtatcatttatagaggttgtttc |
46137071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 159335 - 159281
Alignment:
| Q |
197 |
tagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaaggc |
251 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
159335 |
tagacccggtgctgcagaaagacttagattttatgcaaacttggctagcaaaggc |
159281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 15219034 - 15218954
Alignment:
| Q |
22 |
gtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatgatatagtt |
102 |
Q |
| |
|
||||||| || |||||||| ||||| |||| | ||||||||||||| || || ||||||||||| || ||||| |||||| |
|
|
| T |
15219034 |
gtaactcctatttctcatagtcctgctattaatgataatacttttagcatacaacttgagaatgtatctgatgacatagtt |
15218954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 60965 - 61041
Alignment:
| Q |
19 |
gtggtaactcatacttctcataatcctgttattcagaataatacttttagtatgcagcttgagaatgtttccgatga |
95 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||| |||||||| ||||| ||||| ||||||||||| |||||||| |
|
|
| T |
60965 |
gtggtaactgctacttctcatactccttttattattaataatacatttagcatgcaacttgagaatgtgtccgatga |
61041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 21278862 - 21278915
Alignment:
| Q |
197 |
tagatccggtgctacaaaaagacttagattttatgcacacttggccatcaaagg |
250 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
21278862 |
tagacccggtgctgcagaaagacttagattttatgcaaacttggctagcaaagg |
21278915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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