View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_108 (Length: 300)
Name: NF9264_low_108
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 51547562 - 51547837
Alignment:
| Q |
1 |
taggtaatcattttacactttattttttagactatatatattaagttttaatgtggctaatataacttgtaaagttgaaattcacgtgtcaccggttagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51547562 |
taggtaatcattttacactttattttttagactatat----taagttttaatgtggctaatataacttgtaaagttgaaattcacgtgtcaccggttagt |
51547657 |
T |
|
| Q |
101 |
cctgttcctgtattcgttaggaattgagtcaattgactaaatgttggacatacaaaagagagatgacctatataaataatgtcacgatttttggatagta |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51547658 |
cct------gtattcgttaggaattgagtcaattgactaaatgttggacatacaaaagagagatgacctatataaataatgtctcgatttttggatagta |
51547751 |
T |
|
| Q |
201 |
agaggtatcttggtttcttagaaatcctggtcagaagtctgttgttattctcacttgagtaaatactcaaagtggtccttgaaatt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51547752 |
agaggtatcttggtttcttagaaatcctggtcagaagtctgttgttattctcacttgagtaaatactcaaagtggtccttgaaatt |
51547837 |
T |
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