View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_111 (Length: 289)
Name: NF9264_low_111
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_111 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 5830519 - 5830779
Alignment:
| Q |
14 |
cctgtgatcattagaagtatgcagcagt-------tgtacttgttcggtgtattgaataattaaaatcattctagagtacataaccatcacacattccaa |
106 |
Q |
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| T |
5830519 |
cctgtgatcattagaagtatgcagcagttgccagttgtacttgttcggtgtattgaataattaaaatcattctagagtacataaccatcacacattccaa |
5830618 |
T |
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| Q |
107 |
atatttttattggattcgaaattacattatcaaaatgttcccgcgtctcgagatcaattgtgtcaaaatgtacgatatatgaatcgccacatgatcacca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5830619 |
atatttttattggattcgaaattacattatcaaaatgttcccgcatatcgagatcaattgtgtcaaaatgtacgatatatgaatcgccacatgatcacca |
5830718 |
T |
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| Q |
207 |
aacataggcaacactgacatttcttgggggccttcaggaaattataaaacacgtgatagtg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5830719 |
aacataggcaacactgacatttcttgggggccttcaggaaattataaaacacgtgatagtg |
5830779 |
T |
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