View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_123 (Length: 276)
Name: NF9264_low_123
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_123 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 23471295 - 23471570
Alignment:
| Q |
1 |
aatatgttatcatattgaagaatataaatctaactatacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatctg |
100 |
Q |
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| T |
23471295 |
aatatgttatcatattgaagaatataaatctaactatacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatctg |
23471394 |
T |
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| Q |
101 |
tctgttttctctttcagcattattttgacttttcagcattattgatctatagaccaacttgacatgtattttgttctgcatgtgacatgtttcccgaaca |
200 |
Q |
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| T |
23471395 |
tctgttttctctttcagcattattttgacttttcagcattattgatctatagaccaacttgacatgtattttgttctgcatgtgacatgtttcccgaaca |
23471494 |
T |
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| Q |
201 |
tccatgcaggtgtgttccttggggtatcttcaaacacgcgataccaggtcatcaatggactggaacgtttggtaga |
276 |
Q |
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| T |
23471495 |
tccatgcaggtgtgttccttggggtatcttcaaacacgcgataccaggtcatcaatggactggaacgtttggtaga |
23471570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 23435809 - 23436084
Alignment:
| Q |
1 |
aatatgttatcatattgaagaatataaatctaactatacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23435809 |
aatatgttatcatattgaagaatataaatctaactatacaacagaaacactaacaagttatgtgcaatatggatcaccaagatttgtcatgcttgatatg |
23435908 |
T |
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| Q |
101 |
tctgttttctctttcagcattattttgacttttcagcattattgatctatagaccaacttgacatgtattttgttctgcatgtgacatgtttcccgaaca |
200 |
Q |
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| T |
23435909 |
tctgttttctctttcagcattattttgacttttcagcattattgatctatagaccaacttgacatgtattttgttctgcatgtgacatgtttcccgaaca |
23436008 |
T |
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| Q |
201 |
tccatgcaggtgtgttccttggggtatcttcaaacacgcgataccaggtcatcaatggactggaacgtttggtaga |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23436009 |
tccatgcaggtgtgttccttggggtatcttcaaacacgcaataccaggtcatcaatggactggaacgtttggtaga |
23436084 |
T |
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