View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_126 (Length: 270)

Name: NF9264_low_126
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_126
NF9264_low_126
[»] chr6 (5 HSPs)
chr6 (11-253)||(20660242-20660484)
chr6 (61-201)||(20607186-20607325)
chr6 (11-76)||(20630285-20630351)
chr6 (68-104)||(20630663-20630699)
chr6 (154-198)||(20630736-20630780)
[»] chr1 (1 HSPs)
chr1 (155-229)||(40642994-40643069)
[»] chr7 (1 HSPs)
chr7 (143-229)||(40491664-40491750)
[»] chr3 (1 HSPs)
chr3 (155-236)||(53567973-53568055)
[»] chr8 (1 HSPs)
chr8 (143-239)||(10368051-10368147)
[»] chr5 (1 HSPs)
chr5 (155-223)||(29922997-29923066)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 20660242 - 20660484
Alignment:
Q  11 attatactctaaaggttagatttctagatttggtggtgataaaatatcaattctcaaattaattaaaagtgaaagatactttacacactcaaaaacaatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20660242 attatactctaaaggttagatttctagatttggtggtgataaaatatcaattctcaaattaattaaaagtgaaagatactttacacactcaaaaacaatt 20660341  T
Q  111 ttgatccaaacataaatttgtaaaactcattgtgaatgtatctaaaacataaatcactttacattcaacttcctcgtaatcaaaataaattttacaaatc 210  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20660342 ttgatccaaacataaatttgtaaaaatcattgtgaatgtatctaaaacataaatcactttacattcaacttcctcgtaatcaaaataaattttacaaatc 20660441  T
Q  211 aattcattcaaaaccaattttcatcactgtagaatcaagcaca 253  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  20660442 aattcattcaaaaccaattttcatcactgcagaatcaagcaca 20660484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 20607186 - 20607325
Alignment:
Q  61 ttctcaaattaattaaaagtgaaagatactttacacactcaaaaacaattttgatccaaacataaatttgtaaaactcattgtgaatgtatctaaaacat 160  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||  ||||| ||||| ||||||||||||||||||    
T  20607186 ttctcagattaattaaaagtgaaagacactttacacactcaaaagcaatattga-ccaaacataaattgataaaaatcattatgaatgtatctaaaacat 20607284  T
Q  161 aaatcactttacattcaacttcctcgtaatcaaaataaatt 201  Q
    |||||| ||||||||||||||||||  || |||||||||||    
T  20607285 aaatcaatttacattcaacttcctctaaaccaaaataaatt 20607325  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 20630285 - 20630351
Alignment:
Q  11 attatactctaaaggttagatttctagatttggtggtga-taaaatatcaattctcaaattaattaa 76  Q
    ||||||||||||||||||||||||||| ||| |||||||  |||| |||||||| || |||||||||    
T  20630285 attatactctaaaggttagatttctagttttcgtggtgacaaaaaaatcaattcgcagattaattaa 20630351  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 20630663 - 20630699
Alignment:
Q  68 attaattaaaagtgaaagatactttacacactcaaaa 104  Q
    |||||||||||||| |||| |||||||||||||||||    
T  20630663 attaattaaaagtggaagacactttacacactcaaaa 20630699  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 20630736 - 20630780
Alignment:
Q  154 aaaacataaatcactttacattcaacttcctcgtaatcaaaataa 198  Q
    |||| |||||||| |||||||||||||||||| ||| ||||||||    
T  20630736 aaaaaataaatcaatttacattcaacttcctcataaccaaaataa 20630780  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 40642994 - 40643069
Alignment:
Q  155 aaacataaatcactttacattcaacttcctcgtaatcaaaataaattttaca-aatcaattcattcaaaaccaatt 229  Q
    ||||||||||||||||||||||||||| ||| ||  |||||| ||||||||| |||||||||| |||||| |||||    
T  40642994 aaacataaatcactttacattcaacttgctcttatccaaaatcaattttacagaatcaattcactcaaaatcaatt 40643069  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 40491664 - 40491750
Alignment:
Q  143 tgaatgtatctaaaacataaatcactttacattcaacttcctcgtaatcaaaataaattttaca-aatcaattcattcaaaaccaatt 229  Q
    |||||||||| |||| |||||||||||||| |||||||  ||  || ||||||| ||||||||| |||||||||| |||||| |||||    
T  40491664 tgaatgtatccaaaa-ataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaatt 40491750  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 53567973 - 53568055
Alignment:
Q  155 aaacataaatcactttacattcaacttcctcgtaatcaaaataaattttacaaa-tcaattcattcaaaaccaattttcatca 236  Q
    |||||||||| ||||| |||||||||  ||  |||||||||| ||||||  ||| |||||||| |||||| ||||||||||||    
T  53567973 aaacataaattacttttcattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaattttcatca 53568055  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 10368051 - 10368147
Alignment:
Q  143 tgaatgtatctaaaacataaatcactttacattcaacttcctcgtaatcaaaataaattttac-aaatcaattcattcaaaaccaattttcatcactg 239  Q
    |||||||||||||| || |||||||||||| |||||||  ||  || ||||||| |||||||| ||| ||||||| |||||| ||||| | |||||||    
T  10368051 tgaatgtatctaaa-cacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaattcttatcactg 10368147  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 29922997 - 29923066
Alignment:
Q  155 aaacataaatcactttacattcaacttcctcgtaatcaaaataaattttaca-aatcaattcattcaaaa 223  Q
    |||||||||| |||| ||||||||||  ||  || ||||||| ||||||||| |||||||||||||||||    
T  29922997 aaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaa 29923066  T

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