View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264_low_130 (Length: 268)
Name: NF9264_low_130
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_130 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 24260976 - 24260728
Alignment:
| Q |
1 |
ttataaactcatgatcaccgataactatcttcaaaattggataaagtgaggtgatatat-ggaaaccatgtacgacctaatcagacatgttattaaaaac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260976 |
ttataaactcatgatcaccgataactatcttcaaaattggataaagtgaggtgatatattggaaaccatgtacgacctaatcagacatgttattaaaaac |
24260877 |
T |
|
| Q |
100 |
tataaaattagaaatcattgtatcacatcatgatataatgtcgaatagatatgccataaaatggacattaattcatgataaacttctgaactgcaacaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24260876 |
tataaaattagaaatcattgtatcacatcatgatataatgtcgaatagatatgccataaaatggacattaattcatgataaacttctgaactgcaacaaa |
24260777 |
T |
|
| Q |
200 |
gaagtttaaacactaaaactacgataacactgtcactacacaattttaa |
248 |
Q |
| |
|
||| |||||||||||||||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
24260776 |
gaaatttaaacactaaaactgcgacaacactatcactacgcaattttaa |
24260728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University