View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_14 (Length: 806)
Name: NF9264_low_14
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_14 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 702; Significance: 0; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 17 - 802
Target Start/End: Original strand, 21775 - 22560
Alignment:
| Q |
17 |
aaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacctttatttggtacaacaaacaag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21775 |
aaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacctttatttggtacgacaaacaag |
21874 |
T |
|
| Q |
117 |
caatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacacaaaattagggaattttgttatat |
216 |
Q |
| |
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|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21875 |
caatacgagtggttgccaagctcaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacacaaaattagggaactttgttatat |
21974 |
T |
|
| Q |
217 |
cttcaaaggtgaagcaaaaggtatatggggattgaggatctttcacttcctcaacaccaataactcccttcaaggaagctaccaaatcattgtaaaaatt |
316 |
Q |
| |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
21975 |
ctccaaaggtgaagcaaaaggtatatggggatggaggatctttcacttcctcaacaccaataactccctttaaggaagctaccaaatcattgtaaaagtt |
22074 |
T |
|
| Q |
317 |
ttgttcaagatatgtcaacgttgtccctgaatcaatgattatgttaccatcgattcgacctgtctcaacagttttttgtccgatggtgatgccttcgaga |
416 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22075 |
ttgttcaagatacgtcaatgttgtccctgaatcaatgattatgttaccatcggttcgacctgtctcaacagttttttgtccgatggtgatgccttcgaga |
22174 |
T |
|
| Q |
417 |
ttgaggaagtaataagaaggatttgaagatttgattatgaggggagtagacacaacgccattatcttttataattgcttgatctccaaatttcattttgc |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22175 |
ttgaggaagtaataagaaggatttgaagatttgattatgaggggagtagacacaacgccattatcttttataattgcttcatctccaaatttcattttgc |
22274 |
T |
|
| Q |
517 |
tagttgagtttaaaaatgaaggaaccaaacaataggagaatttgtgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagacc |
616 |
Q |
| |
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|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22275 |
taattgagtttaaacttggaggaaccaaacaataggagaatttgtgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagacc |
22374 |
T |
|
| Q |
617 |
aacaagacccgtagcttttcggcttcttttaaatgtgacatcatttcgatgtccacatccaaaaattgatttaggaaatgtaacatctttttctccaaag |
716 |
Q |
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| T |
22375 |
aacaagacccgtagcttttcggcttcttttaaatgtgacatcattttgatgtccacatccaaaaattgatttaggaaatgtaacatctttttctccaaag |
22474 |
T |
|
| Q |
717 |
ttgatggaatcagtacccaaatctccaatggtgtaagatttatcaccataagtgtaaaaatactcacacttctctgcttctccaca |
802 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |
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| T |
22475 |
ttgatggaatcagtacccaaatctccaatggtgtaagatttatcaccataagtgtaaaaatactcacacttatttgattctccaca |
22560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 712
Target Start/End: Original strand, 13736 - 14432
Alignment:
| Q |
16 |
caaaggaaactgtttttcctttgagatcgtacccaactaaaaaattaaattgtgctctatttccaaagatggaaatacctttatttggtacaacaaacaa |
115 |
Q |
| |
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||||||||||| |||| |||| |||||| || | |||| ||||| || |||||| |||||||||||||||||| | | || ||||| | ||||| |
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| T |
13736 |
caaaggaaacttttttcccttcgagatcatattctactagaaaatcaacgtgtgctatatttccaaagatggaaagatcattggatggtatggccaacaa |
13835 |
T |
|
| Q |
116 |
gcaatacgagttgttgccaaccttaacaactaagttctgaggtttaagggtaacatcagctctcgtaaaatgaaacacaaaattagggaattttgttata |
215 |
Q |
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|||||||||||||||||||| | ||| ||| ||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||| || | |
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| T |
13836 |
gcaatacgagttgttgccaagaacaccaagtaatttctgaggtttaagggtaacatcggctcccgtgaaatgaaacacgaaattagggaactttgctaga |
13935 |
T |
|
| Q |
216 |
tcttcaaaggtgaagcaaaaggtatatggggattgaggatctttcacttcctcaacaccaataactcccttcaaggaagctaccaaatcattgtaaaaat |
315 |
Q |
| |
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||| |||||||||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||||||||||| ||||||| ||||| || ||||| | |
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| T |
13936 |
tctccaaaggtgaagcaaaaggtaaatggtgatggaggatcttttacttcctctacaccaataactcccttcaccgaagctatgaaatcgttataaaatt |
14035 |
T |
|
| Q |
316 |
tttgttcaagatatgtcaacgttgtccctgaatcaatgattatgttaccatcgattcgacctgtctcaacagttttttgtccgatggtgatgccttcgag |
415 |
Q |
| |
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|| |||||||||| ||||| ||||| ||||||||||||||||| |||||||| || |||||| || | | ||||||||||| | |||||| |||||||| |
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| T |
14036 |
ttggttcaagatacgtcaatgttgtacctgaatcaatgattatattaccatcagtttgacctgactgagccgttttttgtccaacggtgataccttcgag |
14135 |
T |
|
| Q |
416 |
attgaggaagtaataagaaggatttgaagatttgattatgaggggagtagacacaacgccattatcttttataattgcttgatctccaaatttcattttg |
515 |
Q |
| |
|
|||||| |||||| | |||||| || || ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
14136 |
attgagatagtaatgataaggatcagatgacttgatcataaggggagtagacacaacaccattgccttttataattgcttgatctccaaatttcaatttg |
14235 |
T |
|
| Q |
516 |
ctagttgagtttaaaaatgaaggaaccaaacaataggagaatttgtgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagac |
615 |
Q |
| |
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||||| |||||| || |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||| || | ||| ||| ||| |||| |
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| T |
14236 |
ctagtcgagtttgaaccgaaaggaaccaaacaataagagaattttcgaccaatagaatcgcctagttgtgaaactagggacaatggccctagtcctagac |
14335 |
T |
|
| Q |
616 |
caacaagacccgtagcttttcggcttcttttaaatgtgacatcatttcgatgtccacatccaaaaattgatttaggaaatgtaacatctttttctcc |
712 |
Q |
| |
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|||||| ||| || | ||| | || ||| | | | ||||||| || ||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
14336 |
caacaatacctgtggttttatgactagtttcagaccctagatcattttgaagtccacatccaaaaactgattttggaaatgtaacatctttttctcc |
14432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 41658 - 41298
Alignment:
| Q |
262 |
cttcctcaacaccaataactcccttcaaggaagctaccaaatcattgtaaaaattttgttcaagatatgtcaacgttgtccctgaatcaatgattatgtt |
361 |
Q |
| |
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||||||||| ||||||| || |||||| ||||| ||| ||||||| | |||| |||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
41658 |
cttcctcaagaccaatagcttccttcacggaagttacaaaatcatcgaaaaagggttgttcaagatacgtcaacgttgtccctgaatcaatgattatgtt |
41559 |
T |
|
| Q |
362 |
accatcgattcgacctgtctcaacagttttttgtccgatggtgatgccttcgagattgaggaagtaataagaaggatttgaagatttgattatgagggga |
461 |
Q |
| |
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||||||||| ||||||||| || ||||||||||| || || || |||||||| || | ||||||| ||| || | ||||||||||||||||||| |
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| T |
41558 |
gccatcgatttgacctgtctgaattgttttttgtccaatagtaataccttcgaggttaacgaagtaaaaagttggttcaagagatttgattatgagggga |
41459 |
T |
|
| Q |
462 |
gtagacacaacgccattatcttttataattgcttgatctccaaatttcattttgctagttgagtttaaaaatgaaggaaccaaacaataggagaatttgt |
561 |
Q |
| |
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||||||||||| ||||| | ||||| ||| ||||| ||||| ||| ||| ||||| |||||| || |||||||||||||||| |||||||| |
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| T |
41458 |
gtagacacaacttcattacccgttatagttgattgattcccaaacgtcaatttactagtcgagtttgaaccaaaaggaaccaaacaatacgagaattttc |
41359 |
T |
|
| Q |
562 |
gaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagaccaacaag |
622 |
Q |
| |
|
|||| || || | ||||||||| ||||||||||| | |||||||||||| | ||||||||| |
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|
| T |
41358 |
gaccgatagaatgacctagttgcgaaactagtgacaatggtcctgctcctaaaccaacaag |
41298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 254 - 622
Target Start/End: Original strand, 26464184 - 26464555
Alignment:
| Q |
254 |
atctttcacttcctcaacaccaataactcccttcaaggaagctaccaaatcattgtaaaaattttgttcaagatatgtcaacgttgtccctgaatcaatg |
353 |
Q |
| |
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||||| ||||||||||| | |||||||| |||||| ||||||| ||||||| | |||| |||||| ||||| |||| | |||||||||||||||| |
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|
| T |
26464184 |
atcttccacttcctcaatatcaataacttccttcaccgaagctaaaaaatcatcgaaaaagggttgttcgagatacatcaatgctgtccctgaatcaatg |
26464283 |
T |
|
| Q |
354 |
attatgttaccatcgattcgacctgtctcaacagttttttgtc---cgatggtgatgccttcgagattgaggaagtaataagaaggatttgaagatttga |
450 |
Q |
| |
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|||||||| ||||| ||| ||||||||| || |||||||||| | || || || ||||| || || ||| ||||| ||| | | |||||||| |
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| T |
26464284 |
attatgttgccatcaatttgacctgtctgaattgttttttgtcgaccaatagtaataccttcaaggttaaggtagtaaaaagtttgttcaagagatttga |
26464383 |
T |
|
| Q |
451 |
ttatgaggggagtagacacaacgccattatcttttataattgcttgatctccaaatttcattttgctagttgagtttaaaaatgaaggaaccaaacaata |
550 |
Q |
| |
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||||||| |||||||||||||| | ||| | ||||| ||| ||| | ||||| || | ||| |||||||||||| || |||||||||||||||| |
|
|
| T |
26464384 |
ttatgagtggagtagacacaacttcgttacccgttatagttgattggttcccaaacttgagtttactagttgagtttgaaccgaaaggaaccaaacaata |
26464483 |
T |
|
| Q |
551 |
ggagaatttgtgaccaattgagtcacctagttgtgaaactagtgatagtggtcctgctccaagaccaacaag |
622 |
Q |
| |
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|||||||| |||| || || | ||||||||||||||||||||| | |||||||||||| ||||||||||| |
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| T |
26464484 |
agagaattttcgaccgatggaatgacctagttgtgaaactagtgaaaatggtcctgctcctagaccaacaag |
26464555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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