View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_144 (Length: 241)
Name: NF9264_low_144
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_144 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 10469729 - 10469819
Alignment:
| Q |
147 |
ctatttgtggattttgaatttcgttcgttggaatggcacttctcagttatagttgcaactccaaaaaacagagtaatcagagtaaaacgac |
237 |
Q |
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| T |
10469729 |
ctatttgtagattttgaatttcgttcgttggaatggaacttctcagttatcgttgcaacttcaaaaaacagagtaatcagagtaaaacgac |
10469819 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 10469602 - 10469669
Alignment:
| Q |
23 |
ggtgctgcagctactttccgatataaaatcataaaacagagcaaagaaccacacgacgtcgtttcagc |
90 |
Q |
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| T |
10469602 |
ggtgctgcagctactttccgatataaaatcataaaacagagcaaagaaccacacgacgtcgtttcagc |
10469669 |
T |
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