View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_151 (Length: 238)

Name: NF9264_low_151
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_151
NF9264_low_151
[»] chr1 (5 HSPs)
chr1 (1-223)||(41178813-41179036)
chr1 (14-69)||(30220242-30220297)
chr1 (12-69)||(3887480-3887538)
chr1 (11-69)||(15515102-15515160)
chr1 (14-68)||(28083922-28083975)
[»] chr3 (5 HSPs)
chr3 (11-69)||(40339221-40339279)
chr3 (11-69)||(41115394-41115452)
chr3 (12-68)||(25359608-25359663)
chr3 (14-69)||(49829088-49829143)
chr3 (11-69)||(32111989-32112047)
[»] chr4 (6 HSPs)
chr4 (11-69)||(32817485-32817543)
chr4 (11-69)||(29779086-29779144)
chr4 (14-68)||(9064229-9064282)
chr4 (12-49)||(9134606-9134643)
chr4 (82-130)||(29468588-29468636)
chr4 (12-68)||(32818404-32818459)
[»] chr2 (3 HSPs)
chr2 (11-69)||(43717319-43717377)
chr2 (11-64)||(21234562-21234615)
chr2 (16-57)||(43969699-43969740)
[»] chr7 (2 HSPs)
chr7 (11-69)||(35105153-35105211)
chr7 (11-70)||(7168900-7168959)
[»] chr6 (3 HSPs)
chr6 (11-69)||(578925-578983)
chr6 (12-49)||(26280601-26280638)
chr6 (24-68)||(3524932-3524976)
[»] chr5 (3 HSPs)
chr5 (11-57)||(5465513-5465559)
chr5 (11-69)||(32421964-32422022)
chr5 (1-41)||(7328699-7328740)
[»] chr8 (2 HSPs)
chr8 (4-49)||(15677868-15677913)
chr8 (16-69)||(24183748-24183801)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41178813 - 41179036
Alignment:
Q  1 tgttttcaaatagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgattttatttaaccttgaatacataaatatatccaaat 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41178813 tgtttttaaatagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgattttatttaaccttgaatacataactatatccaaat 41178912  T
Q  101 agaaatcacactacattcaactcaattttacaaaatgatttgtgtcactatagaaccaaacacacacaaaaagacaagatcagctgaatcaaaacacaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41178913 agaaatcacactacattcaactcaattttacaaaatgatttgtgtcactatagaaccaaacacacacaaaaagacaagatcagctgaatcaaaacacaac 41179012  T
Q  201 acatctt-agctaagataccaaca 223  Q
    ||||||| ||||||||||||||||    
T  41179013 acatcttaagctaagataccaaca 41179036  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 30220297 - 30220242
Alignment:
Q  14 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  30220297 aattgattctacttgaagctataatttgtagttctttgcttctacaattgatttta 30220242  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 3887538 - 3887480
Alignment:
Q  12 agaattgatcctacttgaa-gctagaatttgtagttttttgcttctataattgatttta 69  Q
    ||||||||| |||||| || |||||||||||||| |||| ||||||| |||||||||||    
T  3887538 agaattgattctacttaaaagctagaatttgtagcttttggcttctacaattgatttta 3887480  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 15515160 - 15515102
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| |||| |||||||||||||||||| |||| ||||||  |||| ||||||    
T  15515160 tagaattgattctacatgaagctagaatttgtaggttttggcttctgcaattaatttta 15515102  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 28083975 - 28083922
Alignment:
Q  14 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 68  Q
    ||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||    
T  28083975 aattgattctacttgaagctagaatttgtag-cttttgattctataattaatttt 28083922  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 40339221 - 40339279
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||||    
T  40339221 tagaattgattctacttgaagctacaatttgtagctttttgcttctacaattgatttta 40339279  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 41115452 - 41115394
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  41115452 tagaattgattctacttgaagctagaatttgtagcttttggcttctacaattgatttta 41115394  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 25359663 - 25359608
Alignment:
Q  12 agaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 68  Q
    ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||    
T  25359663 agaattgattctacttgaagttagaatttgtagtttttt-attctataattgatttt 25359608  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 49829143 - 49829088
Alignment:
Q  14 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    ||||||| ||||||||||||| ||||||||||| || ||||||| |||||||||||    
T  49829143 aattgattctacttgaagctacaatttgtagttcttagcttctacaattgatttta 49829088  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 32111989 - 32112047
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| ||||||||||||| ||||||||| |||| |||| || |||||||||||    
T  32111989 tagaattgattctacttgaagctacaatttgtagcttttggcttttagaattgatttta 32112047  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 32817543 - 32817485
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| |||||||| |||||||||||||| ||||| |||||| |||||||||||    
T  32817543 tagaattgattctacttgaggctagaatttgtagctttttacttctacaattgatttta 32817485  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 29779144 - 29779086
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| ||||||||||||||||||||||| ||||  |||||  |||||||||||    
T  29779144 tagaattgattctacttgaagctagaatttgtagcttttcacttctgcaattgatttta 29779086  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 9064229 - 9064282
Alignment:
Q  14 aattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 68  Q
    ||||||| ||||||||| ||||||||||||| |||||| ||||| ||||||||||    
T  9064229 aattgattctacttgaaactagaatttgtag-tttttgattctagaattgatttt 9064282  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 9134606 - 9134643
Alignment:
Q  12 agaattgatcctacttgaagctagaatttgtagttttt 49  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  9134606 agaattgatcctacttgaagctaaaatttgtagctttt 9134643  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 29468636 - 29468588
Alignment:
Q  82 tacataaatatatccaaatagaaatcacactacattcaactcaatttta 130  Q
    |||||||| ||||||||||| |||||||  ||||||||||||| |||||    
T  29468636 tacataaacatatccaaatataaatcactttacattcaactcattttta 29468588  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 32818459 - 32818404
Alignment:
Q  12 agaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttt 68  Q
    ||||||||| ||| |||||||||||||||||||  ||||| ||||| ||||||||||    
T  32818459 agaattgattctatttgaagctagaatttgtag-cttttgattctagaattgatttt 32818404  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 43717319 - 43717377
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| ||||||||||||||||||||||| || |||||| || |||||||||||    
T  43717319 tagaattgattctacttgaagctagaatttgtagcttcttgcttttacaattgatttta 43717377  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 21234615 - 21234562
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattga 64  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||    
T  21234615 tagaattgattctacttgaagctagaatttgtagcttttggcttctacaattga 21234562  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 43969699 - 43969740
Alignment:
Q  16 ttgatcctacttgaagctagaatttgtagttttttgcttcta 57  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||    
T  43969699 ttgattctacttgaaactagaatttgtagctttttgcttcta 43969740  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 35105153 - 35105211
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| ||||||||||||| |||||||||||||| | ||||| |||||| ||||    
T  35105153 tagaattgattctacttgaagctataatttgtagtttttggtttctacaattgacttta 35105211  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 7168900 - 7168959
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgattttat 70  Q
    |||||||||| || | | |||||||||||||||| ||||| ||||||| |||||||||||    
T  7168900 tagaattgattctgcctaaagctagaatttgtagctttttacttctatgattgattttat 7168959  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 578925 - 578983
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| ||||||||||||||||||| ||||||||  |||| ||| |||||||||    
T  578925 tagaattgatactacttgaagctagaatttttagtttttgacttccatagttgatttta 578983  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 26280601 - 26280638
Alignment:
Q  12 agaattgatcctacttgaagctagaatttgtagttttt 49  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  26280601 agaattgattccacttgaagctagaatttgtagttttt 26280638  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 3524932 - 3524976
Alignment:
Q  24 acttgaagctagaatttgtagttttttgcttctataattgatttt 68  Q
    |||| ||||||||||||||||||||| ||||||| ||| ||||||    
T  3524932 actttaagctagaatttgtagtttttggcttctagaatcgatttt 3524976  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 5465559 - 5465513
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttcta 57  Q
    ||||||| || ||||||||||||| |||||||||||||| |||||||    
T  5465559 tagaattaattctacttgaagctacaatttgtagtttttggcttcta 5465513  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 32422022 - 32421964
Alignment:
Q  11 tagaattgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    |||||||||| || |||||||||| |||||||||  ||| ||||||| |||||||||||    
T  32422022 tagaattgattctccttgaagctacaatttgtagcatttggcttctacaattgatttta 32421964  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7328740 - 7328699
Alignment:
Q  1 tgttttcaaatagaattgatcct-acttgaagctagaatttg 41  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  7328740 tgttttcaaatagaattgattctaacttgaagctagaatttg 7328699  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 15677913 - 15677868
Alignment:
Q  4 tttcaaatagaattgatcctacttgaagctagaatttgtagttttt 49  Q
    ||||||||||||||||| |||||||||||||| |||| ||| ||||    
T  15677913 tttcaaatagaattgattctacttgaagctaggatttatagctttt 15677868  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 24183748 - 24183801
Alignment:
Q  16 ttgatcctacttgaagctagaatttgtagttttttgcttctataattgatttta 69  Q
    ||||| ||||||||||||| ||||| |||||||| || | ||||||||||||||    
T  24183748 ttgattctacttgaagctataatttatagtttttggcatatataattgatttta 24183801  T

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