View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_156 (Length: 223)
Name: NF9264_low_156
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_156 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 277999 - 278193
Alignment:
| Q |
18 |
aaatggaacctactgggcttatttctcaagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttacttggtaactc |
117 |
Q |
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| T |
277999 |
aaatggaacctactggtcttatttctcaagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttacttggtaactc |
278098 |
T |
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| Q |
118 |
ctcattctcacaacatttctatcaaaattccaatttcggaactgaaactacattttggccaccatatgattccacaatagttactgcacaggttc |
212 |
Q |
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| T |
278099 |
ctcattctcacaacatttctatcaaaattccaatttcggaactgaaactacattttggccaccatatgattccacaatagttactgcacaagttc |
278193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 48142249 - 48142185
Alignment:
| Q |
45 |
aagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttactt |
109 |
Q |
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| T |
48142249 |
aagaatggagttctcttagtggattttacacagctgaggaagctgattttatgggccagttactt |
48142185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 48147041 - 48146974
Alignment:
| Q |
38 |
atttctcaagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagtt |
105 |
Q |
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| T |
48147041 |
atttctgaagaatgggattctcttagtggacagtacacagctgaggaagctgacttcatgaatcagtt |
48146974 |
T |
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