View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_163 (Length: 207)
Name: NF9264_low_163
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_163 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 4378463 - 4378335
Alignment:
| Q |
64 |
atacttagctaaaggagaaccacaagctaagaagaaattttacattttgcaaaattattagtggacttgtggtttaagaagctattactatacgagtgtg |
163 |
Q |
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| T |
4378463 |
atacttagttaaaggagaaccacaagctaagaagaaattttacattttgcaaaattattagtggacttgtggtttaagaagctattactatacga-tgtg |
4378365 |
T |
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| Q |
164 |
gaattaagcaatgtgaaagtatggtatttg |
193 |
Q |
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| T |
4378364 |
gaattaagcaatgtgaaaatatgatatttg |
4378335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 4374739 - 4374645
Alignment:
| Q |
98 |
aaattttacattttgcaaaattattagtggacttgtggtttaagaagctattactatacgagtgtggaattaagcaatgtgaaagtatggtatttg |
193 |
Q |
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| T |
4374739 |
aaattttacattttgcaaaattattagtggacttgtggtt-aagaagctattactatacgagtgtggaattaagcaatgtgaaagtatggtatttg |
4374645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 4376063 - 4375984
Alignment:
| Q |
18 |
agacgcgtgaagggaagaaaacaagttttgaaattggcgtacgtggatacttagctaaaggagaaccacaagctaagaag |
97 |
Q |
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| T |
4376063 |
agacgcgtgaagggaagaaaacaagttttgaaattggcgtacgtggatacttagctaaaggagaaccacaagctaagaag |
4375984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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