View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264_low_18 (Length: 652)
Name: NF9264_low_18
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 17 - 638
Target Start/End: Complemental strand, 31411534 - 31410911
Alignment:
| Q |
17 |
agttttcatcaatttaacaataaatccaaagaaatgagtgctctgttggnnnnnnnn--tacaatgaagtcgtagctttgcttaaacatcacccatcgaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31411534 |
agttttcatcaatttaacaataaatccaaagaaatgagtgctctgttggaaaaaaaaaatacaataaagtcgtagctttgcttaaacatcacccatcgaa |
31411435 |
T |
|
| Q |
115 |
attcatcagggtaatgnnnnnnntgatctcaaactaagtaggagcagctacactcacagaaaaactatttaacttaagagctgcgaaacagaaaaattaa |
214 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31411434 |
gttcatcagagtaatgaaaaaaatgatctcaaactaagtaggagcagctacactcacagaaaaactatttaacttaggagctgcgaaacagaaaaattaa |
31411335 |
T |
|
| Q |
215 |
aatgatacaaccctggctaagagaaccaaattagagagctatcactcaactcgttcacccattgctcaaaatcattagcctgtgatgatgccgtttcaat |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31411334 |
aatgatacaaccctagctaagagaaccaaattagagagctatcactcaactcattcacccattgctcaaaatcattagcatgtgatgatgccgtttcaat |
31411235 |
T |
|
| Q |
315 |
ttcaaccaccttagcttggcatctattcttggctagtttgttaagtaggtcaaccgtgcccctcctcctctttaaccttggtgacgatgactcacaactt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31411234 |
ttcaaccaccttagcttggcatctattcttggctagtttgttaagtaggtcaaccgtgcccctcctcctctttaaccttggtgacgatgactcacaactt |
31411135 |
T |
|
| Q |
415 |
tcctccgatgaagaaggctccggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacacatcagagccaatgaggtggggaaaattaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31411134 |
tcctccgatgaagaaggctccggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacacatcagagccaatgaggtggggaaaattaa |
31411035 |
T |
|
| Q |
515 |
gcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccatt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31411034 |
gcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccatt |
31410935 |
T |
|
| Q |
615 |
cttttttggatctcttatctctgc |
638 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
31410934 |
cttttttggatctcttatctctgc |
31410911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 244 - 635
Target Start/End: Complemental strand, 31415272 - 31414875
Alignment:
| Q |
244 |
attagagagctatcactcaactcgttcacccattgctcaaaatcattagcctgtgatgatgccgtttcaatttcaaccaccttagct---tggcatctat |
340 |
Q |
| |
|
||||||| || |||| ||||||| |||||||| |||||||||||||| || ||||| | || |||||| |||||||| | ||| |||| ||||| |
|
|
| T |
31415272 |
attagagtgcaatcattcaactcattcacccactgctcaaaatcatttgcttgtgagg---ccttttcaacgccaaccaccgtggctacttggcttctat |
31415176 |
T |
|
| Q |
341 |
tcttggctagtttgttaagtaggtcaaccgtgcccctcctcctctttaaccttggtgacgatgactcacaactttcctccgatgaagaag------gctc |
434 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
31415175 |
tcttggctaatttgttaagtaggtcaaccatgcccctcctcctcttcaaccctggtgacactgactcacaacttccctccgatgaagaagaagaaggctc |
31415076 |
T |
|
| Q |
435 |
cggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacacatcagagccaatgaggtggggaaaattaagcttggcctttcggccacgc |
534 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31415075 |
gggtgattcccttttcaaaaccacctccctctctggctcagatgtagacacatcagagccaatgaggtggggaaaattaagcttggcctttcggcctcgc |
31414976 |
T |
|
| Q |
535 |
atcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttggatctcttatct |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31414975 |
atcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacatacgttccaagccaaactctagcaccattcttttttggatctcttatct |
31414876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 232 - 638
Target Start/End: Complemental strand, 31408137 - 31407734
Alignment:
| Q |
232 |
taagagaaccaaattagagagctatcactcaactcgttcacccattgctcaaaatcattagcctgtgatgatgccgtttcaatttcaaccaccttagctt |
331 |
Q |
| |
|
|||||| |||| ||||| |||| |||||||||||| |||||||||||||||| |||||| | |||| | || ||||| |||| |||||| | ||| |
|
|
| T |
31408137 |
taagagcaccatattagggagcaatcactcaactcattcacccattgctcaacatcattttctagtgagg---ccatttcattttctaccaccatgactt |
31408041 |
T |
|
| Q |
332 |
ggcatctattcttggctagtttgttaagtaggtcaaccgtgcccctcctcctctttaaccttggtgacgatgactcacaactttcctccgatgaagaag- |
430 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||| ||| |||||||||| | | ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
31408040 |
ggcttctattcttggctaatttgttaagtaggtcaaccatgc---tcctcctcttcgatcctggtgacgatgactcacaactatcttccgatgaagaaga |
31407944 |
T |
|
| Q |
431 |
--gctccggtgattcccgtttcaaaaccacctccttctctggctctggtgtaaacacatcagagccaatgaggtggggaaaattaagcttggcctttcgg |
528 |
Q |
| |
|
|||| |||||||||||||||||| |||||| | ||| || ||| | | |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31407943 |
aggctctggtgattcccgtttcaaagccaccttcctctttgactccgacatgtacacatcagagccaatgaggtggggaaaattaagcttggccttttgg |
31407844 |
T |
|
| Q |
529 |
ccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttggatctc |
628 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31407843 |
ccacgcatcttgaaagcagctttatcgtaagcaaaacctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttgggtctc |
31407744 |
T |
|
| Q |
629 |
ttatctctgc |
638 |
Q |
| |
|
|||||||||| |
|
|
| T |
31407743 |
ttatctctgc |
31407734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 489 - 638
Target Start/End: Complemental strand, 1008742 - 1008593
Alignment:
| Q |
489 |
agagccaatgaggtggggaaaattaagcttggcctttcggccacgcatcttaaaagcagctttgtcgtaagccaaagctgcttcctcctcagtcacataa |
588 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| |||| ||||| ||||| |||| ||| | || ||||||||| | ||||| || ||||| | || |
|
|
| T |
1008742 |
agagccgataaggtggggaaaattgagcttggcttttctaccacggatcttgaaagtggctctatcataagccaaaccagcttcttcttcagtttcgtac |
1008643 |
T |
|
| Q |
589 |
gtaccaagccaaaccctagcaccattcttttttggatctcttatctctgc |
638 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
1008642 |
gttccaagccaaactctagctccattcttctttggatcccttatctctgc |
1008593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University