View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_2 (Length: 1119)

Name: NF9264_low_2
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_2
NF9264_low_2
[»] chr3 (4 HSPs)
chr3 (16-1040)||(39890941-39891966)
chr3 (1058-1099)||(23004896-23004937)
chr3 (1058-1095)||(46135670-46135707)
chr3 (1058-1095)||(36674519-36674556)
[»] scaffold0002 (1 HSPs)
scaffold0002 (357-506)||(182313-182460)
[»] chr4 (6 HSPs)
chr4 (357-506)||(495057-495204)
chr4 (357-506)||(18192718-18192865)
chr4 (1058-1102)||(42179149-42179193)
chr4 (1058-1095)||(5817380-5817417)
chr4 (1058-1102)||(22364471-22364515)
chr4 (1058-1095)||(14149960-14149997)
[»] chr7 (3 HSPs)
chr7 (357-506)||(3504763-3504910)
chr7 (357-506)||(27228626-27228773)
chr7 (1058-1102)||(31741171-31741215)
[»] chr5 (5 HSPs)
chr5 (357-503)||(34660059-34660203)
chr5 (1058-1102)||(15285457-15285501)
chr5 (1061-1102)||(35906122-35906163)
chr5 (1058-1095)||(12248418-12248455)
chr5 (1058-1095)||(43100208-43100245)
[»] chr2 (5 HSPs)
chr2 (357-500)||(424730-424867)
chr2 (377-503)||(33226040-33226164)
chr2 (1061-1102)||(24475714-24475755)
chr2 (1058-1102)||(3121738-3121782)
chr2 (1058-1102)||(14945736-14945780)
[»] chr1 (6 HSPs)
chr1 (1058-1102)||(526909-526953)
chr1 (1058-1102)||(13276474-13276518)
chr1 (1058-1102)||(39858475-39858519)
chr1 (1058-1102)||(46845666-46845710)
chr1 (1058-1102)||(49430484-49430528)
chr1 (1005-1040)||(33175269-33175304)
[»] chr8 (3 HSPs)
chr8 (1058-1102)||(28898123-28898167)
chr8 (1062-1099)||(45413559-45413596)
chr8 (1058-1095)||(11904998-11905035)
[»] chr6 (4 HSPs)
chr6 (1058-1102)||(23916100-23916144)
chr6 (1058-1095)||(9521812-9521849)
chr6 (1010-1044)||(3274014-3274048)
chr6 (1058-1095)||(16718142-16718179)


Alignment Details
Target: chr3 (Bit Score: 821; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 821; E-Value: 0
Query Start/End: Original strand, 16 - 1040
Target Start/End: Original strand, 39890941 - 39891966
Alignment:
Q  16 acatcaacataatccaaatttataaaattataatctattacgatttggagaatctaaaatgcacaacggtggtagaatccatctaagtcataccattttg 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39890941 acatcaacataatccaaattcataaaattataatctattacgatttggagaatctaaaatgcacaacggtggtagaatccatctaagtcataccattttg 39891040  T
Q  116 tttgaaaaccaatagaagcaatcttgtcggctcagtgtttgtgctctatgagaatataaagaaatgtaaaaatgcatgttttttgttaactccgtacaac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39891041 tttgaaaaccaatagaagcaatcttgtcggctcagtgtttgtgctctatgagaatataaagaaatgtaaaaatgcatgttttttgttaactccgtacaac 39891140  T
Q  216 ccagtcatttatattcctcaaatgttagtgaaatgtactggaatttatgacagtcatagtaacaagnnnnnnnnnnnnnnnn-gaaagagtcatagtaac 314  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                 |||||||||||||||||    
T  39891141 tcagtcatttatattcctcaaatgttagtgaaatgtactagaatttatgacagtcatagtaacaagtttttttctttttttttgaaagagtcatagtaac 39891240  T
Q  315 aagttgatagtcggtctttaaccaaagcctactccaattattagctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagct 414  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  39891241 aagttgatagtcagtctttaaccaaagcctactccaattattagctcacatcgacgggaagttttggcacctcgatgtcggctcttcgccacctggagct 39891340  T
Q  415 gtagtatatgttttaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccgctataggc 514  Q
    ||||||||||||||||||||||| | ||||| ||||||||  |||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||    
T  39891341 gtagtatatgttttaagggttggaccgttcgtccattaaagtggtacgtgagctggattcagaacgtcgtgaggcagttcggtccatatccgctgtgggc 39891440  T
Q  515 gtgtaagttatctcaatagcatttatcatcccatagagcccagcttggaagatggaaatgatatgtaggttgactcgatagctaactaaatattacaaat 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  39891441 gtgtaagttatctcaatagcatttatcatcccatagagcccagcttgaaagatggaaatgacatgtaggttgactcgaaagctaactaaatattacaaat 39891540  T
Q  615 ttcaaacacaatgtgtttgttacatattaaaaatgaaaataattcaacaccaaagttgacatgtaaaatcacaatnnnnnnncacaaatgatagatagat 714  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  39891541 ttcaaacacaatgtgtttgttacatattaaaaatgataataattcaacaccaaagttgacatgtaaaatcacaataaaaaaacacaaatgatagatagat 39891640  T
Q  715 tcttcatacttgcgagacaagctacacatggaggccatggtgcaaccttgagccattaaattatcattagtagaaattttgttgtgaaagaggaatataa 814  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39891641 tcttcatacttgcaagacaagctacacatggaggccatggtgcaaccttgagccattaaattatcattagtagaaattttgttgtgaaagaggaatataa 39891740  T
Q  815 tgattctagataatcttggtctaaagcaccttattcgacaaccacttttaaaatatataagcatccttaaagcacatctcccgaatgacagattccttca 914  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  39891741 tgattctagataattttggtcaaaagcaccttattcgacaaccacttttgaaatatataagcatttttaaagcacatctcccgaatgacagattccttca 39891840  T
Q  915 aaataaaaatttaatattttaatgaaggcgacttctaataacttgaaaacacatgacggggtaacaaattattgaatacttgttctcgtgagcttaattg 1014  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||    
T  39891841 aaataaaaatttaatattttaatgaaggcggcttctaataacttgaaaacacatgatggggtaacaaattatttaatacttgttctcgtgagcttagttg 39891940  T
Q  1015 atatggacaatgcataatatacgtaa 1040  Q
    ||||| ||||| ||||||||| ||||    
T  39891941 atatgaacaatacataatatatgtaa 39891966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1058 - 1099
Target Start/End: Complemental strand, 23004937 - 23004896
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatg 1099  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  23004937 ggataatgtttcatgaacacccttttctccatacacactatg 23004896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Complemental strand, 46135707 - 46135670
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46135707 ggataatgtttcatgaacatcattttctccatacacac 46135670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Original strand, 36674519 - 36674556
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  36674519 ggattatgtttcatgaacatccttttctctatacacac 36674556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 115; Significance: 8e-58; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 357 - 506
Target Start/End: Complemental strand, 182460 - 182313
Alignment:
Q  357 agctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaac 456  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||||| |    
T  182460 agctcacatcgacgggaaggtttggcacctcgatgtcggctcttcgccacctggagctgtagtat--gttccaagggttgggctgttcgcccattaaagc 182363  T
Q  457 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182362 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 182313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 8e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 357 - 506
Target Start/End: Original strand, 495057 - 495204
Alignment:
Q  357 agctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaac 456  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||||| |    
T  495057 agctcacatcgacgggaaggtttggcacctcgatgtcggctcttcgccacctggagctgtagtat--gttccaagggttgggctgttcgcccattaaagc 495154  T
Q  457 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  495155 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 495204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 8e-58
Query Start/End: Original strand, 357 - 506
Target Start/End: Original strand, 18192718 - 18192865
Alignment:
Q  357 agctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaac 456  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||| |    
T  18192718 agctcacatcgacgggaaggtttggcacctcgatgtcggctcttcgccacctggagctgtagtatat--tccaagggttgggctgttcgcccattaaagc 18192815  T
Q  457 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18192816 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 18192865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Original strand, 42179149 - 42179193
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  42179149 ggataatgtttcatgaacatcctttttttcatacacactatgtac 42179193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Original strand, 5817380 - 5817417
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  5817380 ggataatgtttcatgtacatccttttctccatacacac 5817417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Original strand, 22364471 - 22364515
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| ||||||||||||||| | |||||||    
T  22364471 ggataatgtttcatgaacacccttttctccatacatattatgtac 22364515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Original strand, 14149960 - 14149997
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  14149960 ggataatgtttcatgaacacccttttctctatacacac 14149997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 2e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 357 - 506
Target Start/End: Complemental strand, 3504910 - 3504763
Alignment:
Q  357 agctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaac 456  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||| |    
T  3504910 agctcacatcgacgggaaggtttggcacctcgatgtcggctcttcgccacctggagctgtagtatat--tccaagggttgggctgttcgcccattaaagc 3504813  T
Q  457 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 506  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3504812 ggtacgtgaactgggttcagaacgtcgtgagacagttcggtccatatccg 3504763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 357 - 506
Target Start/End: Complemental strand, 27228773 - 27228626
Alignment:
Q  357 agctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaac 456  Q
    ||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||||| |    
T  27228773 agctcacatcgacgggaaggtttgacacctcgatgtcggctcttcgccacctggagctgtagtat--gttccaagggttgggctgttcgcccattaaagc 27228676  T
Q  457 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228675 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatatccg 27228626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Complemental strand, 31741215 - 31741171
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    |||||||||||||||||||||||||| || |||||||||||||||    
T  31741215 ggataatgtttcatgaacatccttttttctatacacactatgtac 31741171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 2e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 357 - 503
Target Start/End: Original strand, 34660059 - 34660203
Alignment:
Q  357 agctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaac 456  Q
    |||||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||  |||||||||| ||||||||||||||| |    
T  34660059 agctcatatcgacgggaaggtttggcacctcgatgtcggctcttcgccacctggagctgtagtat--gttccaagggttgggttgttcgcccattaaagc 34660156  T
Q  457 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtccatat 503  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  34660157 ggtacgtgagctgggtacagaacgtcgtgagacagttcagtccatat 34660203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Complemental strand, 15285501 - 15285457
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  15285501 ggataatgtttcatgaacacccttttctgcatacacactatgtac 15285457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1061 - 1102
Target Start/End: Complemental strand, 35906163 - 35906122
Alignment:
Q  1061 taatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    |||||||||||||||| ||||||||||||||| |||||||||    
T  35906163 taatgtttcatgaacacccttttctccatacatactatgtac 35906122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Complemental strand, 12248455 - 12248418
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  12248455 ggataatgtttcatgaacacccttttctctatacacac 12248418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Original strand, 43100208 - 43100245
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  43100208 ggataatgtttcatgaacacccttttctctatacacac 43100245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 6e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 357 - 500
Target Start/End: Complemental strand, 424867 - 424730
Alignment:
Q  357 agctcacattgacgggaagttttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaac 456  Q
    ||||||||| ||||||||| ||||||||||| |||    ||||||||||||| ||||||||||||  |||  |||||||||||||||||||||||||| |    
T  424867 agctcacatcgacgggaaggtttggcacctccatg----ctcttcgccacctagagctgtagtat--gttccaagggttgggctgttcgcccattaaagc 424774  T
Q  457 ggtacgtgagctgggttcagaacgtcgtgagacagttcggtcca 500  Q
    ||| |||||||| |||||||||||||||||||||||||||||||    
T  424773 ggtgcgtgagctcggttcagaacgtcgtgagacagttcggtcca 424730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 377 - 503
Target Start/End: Original strand, 33226040 - 33226164
Alignment:
Q  377 tttggcacctcgatgttggctcttcgccacctggagctgtagtatatgttttaagggttgggctgttcgcccattaaaacggtacgtgagctgggttcag 476  Q
    ||||||||||||| || ||||||| ||||||| ||| ||||||||  |||  |||||||||| ||||||||||||||||||||||||||||||||||||     
T  33226040 tttggcacctcgacgtcggctctttgccacctagagttgtagtat--gttccaagggttgggttgttcgcccattaaaacggtacgtgagctgggttcat 33226137  T
Q  477 aacgtcgtgagacagttcggtccatat 503  Q
    |||||| ||||||||||  ||||||||    
T  33226138 aacgtcatgagacagtttagtccatat 33226164  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1061 - 1102
Target Start/End: Original strand, 24475714 - 24475755
Alignment:
Q  1061 taatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  24475714 taatgtttcatgaacacccttttctccatacacactatgtac 24475755  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Complemental strand, 3121782 - 3121738
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  3121782 ggataatgtttcatgaacacccttttctgcatacacactatgtac 3121738  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Original strand, 14945736 - 14945780
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||    
T  14945736 ggataatgtttcatgaacacccttttcttcatacacattatgtac 14945780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Original strand, 526909 - 526953
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  526909 ggataatgtttcatgaacacccttttctccatacacactatgtac 526953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Original strand, 13276474 - 13276518
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  13276474 ggataatgtttcatgaacacccttttctccatacacactatgtac 13276518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Complemental strand, 39858519 - 39858475
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  39858519 ggataatgtttcatgaacacccttttctccatacacactatgtac 39858475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Original strand, 46845666 - 46845710
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||| |||||||| |||||||    
T  46845666 ggataatgtttcatgaacacccttttctgcatacacattatgtac 46845710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Original strand, 49430484 - 49430528
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||    
T  49430484 ggataatatttcatgaacactcttttctccatacacactatgtac 49430528  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1005 - 1040
Target Start/End: Original strand, 33175269 - 33175304
Alignment:
Q  1005 agcttaattgatatggacaatgcataatatacgtaa 1040  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33175269 agcttaattgatatggacaatgcataatatatgtaa 33175304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Complemental strand, 28898167 - 28898123
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  28898167 ggataatgtttcatgaacaccattttctccatacacactatgtac 28898123  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1062 - 1099
Target Start/End: Original strand, 45413559 - 45413596
Alignment:
Q  1062 aatgtttcatgaacatccttttctccatacacactatg 1099  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  45413559 aatgtttcatgaacacccttttctccatacacactatg 45413596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Complemental strand, 11905035 - 11904998
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  11905035 ggataatgtttcatgaacacccttttctctatacacac 11904998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1058 - 1102
Target Start/End: Complemental strand, 23916144 - 23916100
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacactatgtac 1102  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  23916144 ggataatgtttcatgaacacccttttctgcatacacactatgtac 23916100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Original strand, 9521812 - 9521849
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  9521812 ggataatgtttcatgtacatccttttctccatacacac 9521849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1010 - 1044
Target Start/End: Original strand, 3274014 - 3274048
Alignment:
Q  1010 aattgatatggacaatgcataatatacgtaaagtt 1044  Q
    |||||||||||||||||||||||||| ||||||||    
T  3274014 aattgatatggacaatgcataatatatgtaaagtt 3274048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1058 - 1095
Target Start/End: Complemental strand, 16718179 - 16718142
Alignment:
Q  1058 ggataatgtttcatgaacatccttttctccatacacac 1095  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  16718179 ggataatgtttcatgaacacccttttctctatacacac 16718142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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