View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_20 (Length: 647)
Name: NF9264_low_20
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Original strand, 4266338 - 4266870
Alignment:
| Q |
19 |
aaggatatcactaattctccccataaaatttgatttatatcttaaaagttttctctcatgatatattcttttgggatattctctcatcattataggtaat |
118 |
Q |
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| T |
4266338 |
aaggatatcactaattctctccagaaaatttgatttatatcttaaaagttttc-ctcatagc----tct-----ga-atactctcatcattataggtaat |
4266426 |
T |
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| Q |
119 |
agattatactcatgtaaaattattggtagattggactaatatgaaggtgcaagcaatgtacgctctacaccgcaagcacaaacatgcattgctctttctt |
218 |
Q |
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| T |
4266427 |
agattatactcatgtaagattattggtagattggactaatatgaaggtgcaagcaatgtacgctctacaccgcaggcacaaacatgcattgctctttctt |
4266526 |
T |
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| Q |
219 |
tctttttaataataaacgataatatgttagtttttgtcataacttaaccatgaacctcaaacttcttaacccttaactcaaatagttgagtctcccaacc |
318 |
Q |
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| T |
4266527 |
tctttttaataataaacgataatatgttagtttttgtcataacttaaccatgaacctcaaacttcttaacccttaactcaaatagttgagtctcccaacc |
4266626 |
T |
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| Q |
319 |
catgcattactccttaataatcactatgtaatgaaaataaagggtgatcaatcggtcacaacgcaaatccctcaaggacctcaatggatttttcatccat |
418 |
Q |
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| T |
4266627 |
catgcattactccttaacaatcactatgtaatgaaaataaagggtgatcaatcggtcacaacgcaaatccctcaaggacctcaatggatttttcatccat |
4266726 |
T |
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| Q |
419 |
ttccctagaaactcttgctataaaagaacctttgtaccatgaaaaaggtagacatttcattctataaaacctcttactcacgtctatctaaaacttgctt |
518 |
Q |
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| T |
4266727 |
ttccctagaaactcttgctctaaaagaacctttgtaccatgaaaaaggtagatatttcattctataaaacctcttactcacgtctatctaaaacttgctt |
4266826 |
T |
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| Q |
519 |
gagcgtcttgagtatttatagatgcatgaaccactcctttgttc |
562 |
Q |
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| T |
4266827 |
gagcgtcttgagtatttatagatgcatgaaccactcctttgttc |
4266870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 542 - 636
Target Start/End: Original strand, 4266988 - 4267081
Alignment:
| Q |
542 |
gcatgaaccactcctttgttctcccattcgtactcaccaaagtaaaaaccacattatgaagtttatcaacaataagggacaaattaaacaccaaa |
636 |
Q |
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| T |
4266988 |
gcatgaaccactcctttgttctcccata-gtactcaccaaagtaaaaaccacattatgaagtttatcaacaataagggacaaattaaacaccaaa |
4267081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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